these 13 derivations will be built:
  /nix/store/s7kaid75li1449gfl3ack995bng5dkj3-pythoncheck.sh.drv
  /nix/store/fx9h7hrk4zsl3y3y5y1p7v4gj87k5g67-pythoncheck.sh.drv
  /nix/store/5k46c6gnvnkd1a37v0lndrvplsm4d9qd-builder.pl.drv
  /nix/store/q56c5j7gzw3aa9y8fzjb1byvf3z8igar-python3-3.14.6-env.drv
  /nix/store/4r73x68xbkxifh923qk5mwqhjmif4fjx-replace-workspace-values.drv
  /nix/store/q5fv01jg1m75y0sp3fnfjpgzc8sfvcjd-python3-3.14.6-env.drv
  /nix/store/v8xmrm1dxr42vvyj9zmd6qhiyf9y1c4q-pythoncheck.sh.drv
  /nix/store/s7rkfs8q0ab5s0v19brn6cxs6ibm89sr-pythoncheck.sh.drv
  /nix/store/m1d4g0h93phbi0kgpapcm14ihyahslqv-fetch-cargo-vendor-util.drv
  /nix/store/f9q62yii7grnbg7j7gx7nhx38gvizfcl-source.drv
  /nix/store/qzra1gsj3iva7q6vc33a23ms00g88pqa-biotite-1.7.1-vendor-vendor-staging.drv
  /nix/store/avvk6n5kd87rdjlikksxlkfcxk9bcg0g-biotite-1.7.1-vendor-vendor.drv
  /nix/store/nz4zhqdvp97fwc4wkpzg32slc6gm9w7b-python3.14-biotite-1.7.1.drv
these 18 paths will be fetched (1.1 MiB download, 5.2 MiB unpacked):
  /nix/store/kjg4j0j60xji1w5zaj5bw6s3f5qmkfzb-bin
  /nix/store/vmaws8b0byjp9hmnpmvpv0b3c1d5ana5-cargo-setup-hook.sh
  /nix/store/56xz0nfy84ywiqafb8c3rmihykkv8xrm-make-binary-wrapper-hook
  /nix/store/jpbqiy2c5hdv76s0cavv3l665xzjksw5-nix-prefetch-git-26.11
  /nix/store/n642r7qrsldf792clkb3s7cn2ckvx4qw-pypa-build-hook.sh
  /nix/store/4wlznh578q7r4vry0z35p0cp8mmlw05m-pypa-install-hook
  /nix/store/2ahiyxbx4i4q5y8nx659n7sbq2bd9wfq-python3.14-charset-normalizer-3.4.9
  /nix/store/2j91rkvxs64in214lya4yvn7ckris644-python3.14-flake8-7.3.0
  /nix/store/v305hymj0a1c6d84y197d5xaviwscsn9-python3.14-mccabe-0.7.0
  /nix/store/47v3kivij0v33d98n84a78cfdll4zdgn-python3.14-pycodestyle-2.14.0
  /nix/store/63drv0c84xdgdn2y5a495wdcvmrf85rx-python3.14-pyflakes-3.4.0
  /nix/store/bx0rzjrqs4cwpmr6aai8wgshiigs94vn-python3.14-pysocks-1.7.1
  /nix/store/2xrlfh3dd4bh5yycrg1mnkx9nqsx6hxf-python3.14-requests-2.34.2
  /nix/store/n5n6qbailqhnf4wy5v7kld2m18s1jf1v-python3.14-semantic-version-2.10.0
  /nix/store/skxxy6qm79s8lbdjsvwi4wk8s98lxnix-python3.14-setuptools-rust-1.13.0
  /nix/store/nhga9bbcills0ii70qcz7j5lyfwspgw0-python3.14-setuptools-scm-10.0.5
  /nix/store/w8fzwlgd5s0jp7mzgvbvr0pmsnl8hnw5-python3.14-tomli-w-1.2.0
  /nix/store/bha9483j81ig7w47zy7hr7xiv623llvy-python3.14-vcs-versioning-1.1.1
building '/nix/store/5k46c6gnvnkd1a37v0lndrvplsm4d9qd-builder.pl.drv'
building '/nix/store/d903r2dwvhrpsi5hjhr0lkixzjb9v1yy-source.drv'
source> structuredAttrs is enabled
builder.pl> Running phase: patchPhase
builder.pl> Running phase: updateAutotoolsGnuConfigScriptsPhase
builder.pl> Running phase: configurePhase
building '/nix/store/s7kaid75li1449gfl3ack995bng5dkj3-pythoncheck.sh.drv'
building '/nix/store/v8xmrm1dxr42vvyj9zmd6qhiyf9y1c4q-pythoncheck.sh.drv'
builder.pl> no configure script, doing nothing
builder.pl> Running phase: buildPhase
builder.pl> Running phase: checkPhase
builder.pl> Running phase: installPhase
builder.pl> no Makefile or custom installPhase, doing nothing
builder.pl> Running phase: fixupPhase
builder.pl> shrinking RPATHs of ELF executables and libraries in /nix/store/asr54ydjjvpigfys71dbcxdmkh7633f3-builder.pl
builder.pl> checking for references to /build/ in /nix/store/asr54ydjjvpigfys71dbcxdmkh7633f3-builder.pl...
source> 
source> trying https://github.com/biotite-dev/biotite/archive/refs/tags/v1.7.1.tar.gz
builder.pl> patching script interpreter paths in /nix/store/asr54ydjjvpigfys71dbcxdmkh7633f3-builder.pl
source>   % Total    % Received % Xferd  Average Speed  Time    Time    Time   Current
source>                                  Dload  Upload  Total   Spent   Left   Speed
building '/nix/store/fx9h7hrk4zsl3y3y5y1p7v4gj87k5g67-pythoncheck.sh.drv'
building '/nix/store/s7rkfs8q0ab5s0v19brn6cxs6ibm89sr-pythoncheck.sh.drv'
building '/nix/store/q56c5j7gzw3aa9y8fzjb1byvf3z8igar-python3-3.14.6-env.drv'
python3-3.14.6-env> structuredAttrs is enabled
python3-3.14.6-env> created 225 symlinks in user environment
source>   0      0   0      0   0      0      0      0                              0
building '/nix/store/q5fv01jg1m75y0sp3fnfjpgzc8sfvcjd-python3-3.14.6-env.drv'
python3-3.14.6-env> structuredAttrs is enabled
python3-3.14.6-env> created 249 symlinks in user environment
building '/nix/store/4r73x68xbkxifh923qk5mwqhjmif4fjx-replace-workspace-values.drv'
building '/nix/store/m1d4g0h93phbi0kgpapcm14ihyahslqv-fetch-cargo-vendor-util.drv'
source> 100 82.78M   0 82.78M   0      0 10.82M      0           00:07         14.74M
source> unpacking source archive /build/download.tar.gz
building '/nix/store/cdx9qhgh04dj2ix7gjyqrdfwq4h3xkkn-biotite-1.7.1-vendor-vendor-staging.drv'
biotite-1.7.1-vendor-vendor-staging> Running phase: unpackPhase
biotite-1.7.1-vendor-vendor-staging> unpacking source archive /nix/store/aa831ygkbmvxv42nkc86z3zqsk5hgkcb-source
biotite-1.7.1-vendor-vendor-staging> source root is source
biotite-1.7.1-vendor-vendor-staging> Running phase: patchPhase
biotite-1.7.1-vendor-vendor-staging> Running phase: updateAutotoolsGnuConfigScriptsPhase
biotite-1.7.1-vendor-vendor-staging> Running phase: buildPhase
biotite-1.7.1-vendor-vendor-staging> Skipping local dependency: biotite_rust
biotite-1.7.1-vendor-vendor-staging> Fetching https://static.crates.io/crates/autocfg/1.5.1/download -> tarballs/autocfg-1.5.1.tar.gz
biotite-1.7.1-vendor-vendor-staging> Fetching https://static.crates.io/crates/heck/0.5.0/download -> tarballs/heck-0.5.0.tar.gz
biotite-1.7.1-vendor-vendor-staging> Fetching https://static.crates.io/crates/itertools/0.14.0/download -> tarballs/itertools-0.14.0.tar.gz
biotite-1.7.1-vendor-vendor-staging> Fetching https://static.crates.io/crates/matrixmultiply/0.3.11/download -> tarballs/matrixmultiply-0.3.11.tar.gz
biotite-1.7.1-vendor-vendor-staging> Fetching https://static.crates.io/crates/ndarray/0.17.2/download -> tarballs/ndarray-0.17.2.tar.gz
biotite-1.7.1-vendor-vendor-staging> Fetching https://static.crates.io/crates/indoc/2.0.7/download -> tarballs/indoc-2.0.7.tar.gz
biotite-1.7.1-vendor-vendor-staging> Fetching https://static.crates.io/crates/either/1.17.0/download -> tarballs/either-1.17.0.tar.gz
biotite-1.7.1-vendor-vendor-staging> Fetching https://static.crates.io/crates/memoffset/0.9.1/download -> tarballs/memoffset-0.9.1.tar.gz
biotite-1.7.1-vendor-vendor-staging> Fetching https://static.crates.io/crates/num-integer/0.1.47/download -> tarballs/num-integer-0.1.47.tar.gz
biotite-1.7.1-vendor-vendor-staging> Fetching https://static.crates.io/crates/libc/0.2.189/download -> tarballs/libc-0.2.189.tar.gz
biotite-1.7.1-vendor-vendor-staging> Fetching https://static.crates.io/crates/numpy/0.27.1/download -> tarballs/numpy-0.27.1.tar.gz
biotite-1.7.1-vendor-vendor-staging> Fetching https://static.crates.io/crates/num-complex/0.4.6/download -> tarballs/num-complex-0.4.6.tar.gz
biotite-1.7.1-vendor-vendor-staging> Fetching https://static.crates.io/crates/portable-atomic/1.15.0/download -> tarballs/portable-atomic-1.15.0.tar.gz
biotite-1.7.1-vendor-vendor-staging> Fetching https://static.crates.io/crates/proc-macro2/1.0.107/download -> tarballs/proc-macro2-1.0.107.tar.gz
biotite-1.7.1-vendor-vendor-staging> Fetching https://static.crates.io/crates/num-traits/0.2.19/download -> tarballs/num-traits-0.2.19.tar.gz
biotite-1.7.1-vendor-vendor-staging> Fetching https://static.crates.io/crates/pyo3-build-config/0.27.2/download -> tarballs/pyo3-build-config-0.27.2.tar.gz
biotite-1.7.1-vendor-vendor-staging> Fetching https://static.crates.io/crates/once_cell/1.21.4/download -> tarballs/once_cell-1.21.4.tar.gz
biotite-1.7.1-vendor-vendor-staging> Fetching https://static.crates.io/crates/pyo3-macros/0.27.2/download -> tarballs/pyo3-macros-0.27.2.tar.gz
biotite-1.7.1-vendor-vendor-staging> Fetching https://static.crates.io/crates/portable-atomic-util/0.2.7/download -> tarballs/portable-atomic-util-0.2.7.tar.gz
biotite-1.7.1-vendor-vendor-staging> Fetching https://static.crates.io/crates/pyo3/0.27.2/download -> tarballs/pyo3-0.27.2.tar.gz
biotite-1.7.1-vendor-vendor-staging> Fetching https://static.crates.io/crates/quote/1.0.47/download -> tarballs/quote-1.0.47.tar.gz
biotite-1.7.1-vendor-vendor-staging> Fetching https://static.crates.io/crates/rustc-hash/2.1.3/download -> tarballs/rustc-hash-2.1.3.tar.gz
biotite-1.7.1-vendor-vendor-staging> Fetching https://static.crates.io/crates/pyo3-ffi/0.27.2/download -> tarballs/pyo3-ffi-0.27.2.tar.gz
biotite-1.7.1-vendor-vendor-staging> Fetching https://static.crates.io/crates/pyo3-macros-backend/0.27.2/download -> tarballs/pyo3-macros-backend-0.27.2.tar.gz
biotite-1.7.1-vendor-vendor-staging> Fetching https://static.crates.io/crates/smallvec/1.15.2/download -> tarballs/smallvec-1.15.2.tar.gz
biotite-1.7.1-vendor-vendor-staging> Fetching https://static.crates.io/crates/rawpointer/0.2.1/download -> tarballs/rawpointer-0.2.1.tar.gz
biotite-1.7.1-vendor-vendor-staging> Fetching https://static.crates.io/crates/target-lexicon/0.13.5/download -> tarballs/target-lexicon-0.13.5.tar.gz
biotite-1.7.1-vendor-vendor-staging> Fetching https://static.crates.io/crates/rustversion/1.0.23/download -> tarballs/rustversion-1.0.23.tar.gz
biotite-1.7.1-vendor-vendor-staging> Fetching https://static.crates.io/crates/unindent/0.2.4/download -> tarballs/unindent-0.2.4.tar.gz
biotite-1.7.1-vendor-vendor-staging> Fetching https://static.crates.io/crates/unicode-ident/1.0.24/download -> tarballs/unicode-ident-1.0.24.tar.gz
biotite-1.7.1-vendor-vendor-staging> Fetching https://static.crates.io/crates/syn/2.0.119/download -> tarballs/syn-2.0.119.tar.gz
building '/nix/store/avvk6n5kd87rdjlikksxlkfcxk9bcg0g-biotite-1.7.1-vendor-vendor.drv'
biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/pk0nryz41jqq1ardi2s85b659x2hwvnc-biotite-1.7.1-vendor-vendor/source-registry-0/autocfg-1.5.1
biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/pk0nryz41jqq1ardi2s85b659x2hwvnc-biotite-1.7.1-vendor-vendor/source-registry-0/either-1.17.0
biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/pk0nryz41jqq1ardi2s85b659x2hwvnc-biotite-1.7.1-vendor-vendor/source-registry-0/heck-0.5.0
biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/pk0nryz41jqq1ardi2s85b659x2hwvnc-biotite-1.7.1-vendor-vendor/source-registry-0/indoc-2.0.7
biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/pk0nryz41jqq1ardi2s85b659x2hwvnc-biotite-1.7.1-vendor-vendor/source-registry-0/itertools-0.14.0
biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/pk0nryz41jqq1ardi2s85b659x2hwvnc-biotite-1.7.1-vendor-vendor/source-registry-0/libc-0.2.189
biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/pk0nryz41jqq1ardi2s85b659x2hwvnc-biotite-1.7.1-vendor-vendor/source-registry-0/matrixmultiply-0.3.11
biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/pk0nryz41jqq1ardi2s85b659x2hwvnc-biotite-1.7.1-vendor-vendor/source-registry-0/memoffset-0.9.1
biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/pk0nryz41jqq1ardi2s85b659x2hwvnc-biotite-1.7.1-vendor-vendor/source-registry-0/ndarray-0.17.2
biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/pk0nryz41jqq1ardi2s85b659x2hwvnc-biotite-1.7.1-vendor-vendor/source-registry-0/num-complex-0.4.6
biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/pk0nryz41jqq1ardi2s85b659x2hwvnc-biotite-1.7.1-vendor-vendor/source-registry-0/num-integer-0.1.47
biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/pk0nryz41jqq1ardi2s85b659x2hwvnc-biotite-1.7.1-vendor-vendor/source-registry-0/num-traits-0.2.19
biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/pk0nryz41jqq1ardi2s85b659x2hwvnc-biotite-1.7.1-vendor-vendor/source-registry-0/numpy-0.27.1
biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/pk0nryz41jqq1ardi2s85b659x2hwvnc-biotite-1.7.1-vendor-vendor/source-registry-0/once_cell-1.21.4
biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/pk0nryz41jqq1ardi2s85b659x2hwvnc-biotite-1.7.1-vendor-vendor/source-registry-0/portable-atomic-1.15.0
biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/pk0nryz41jqq1ardi2s85b659x2hwvnc-biotite-1.7.1-vendor-vendor/source-registry-0/portable-atomic-util-0.2.7
biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/pk0nryz41jqq1ardi2s85b659x2hwvnc-biotite-1.7.1-vendor-vendor/source-registry-0/proc-macro2-1.0.107
biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/pk0nryz41jqq1ardi2s85b659x2hwvnc-biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-0.27.2
biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/pk0nryz41jqq1ardi2s85b659x2hwvnc-biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-build-config-0.27.2
biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/pk0nryz41jqq1ardi2s85b659x2hwvnc-biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-ffi-0.27.2
biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/pk0nryz41jqq1ardi2s85b659x2hwvnc-biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-macros-0.27.2
biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/pk0nryz41jqq1ardi2s85b659x2hwvnc-biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-macros-backend-0.27.2
biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/pk0nryz41jqq1ardi2s85b659x2hwvnc-biotite-1.7.1-vendor-vendor/source-registry-0/quote-1.0.47
biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/pk0nryz41jqq1ardi2s85b659x2hwvnc-biotite-1.7.1-vendor-vendor/source-registry-0/rawpointer-0.2.1
biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/pk0nryz41jqq1ardi2s85b659x2hwvnc-biotite-1.7.1-vendor-vendor/source-registry-0/rustc-hash-2.1.3
biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/pk0nryz41jqq1ardi2s85b659x2hwvnc-biotite-1.7.1-vendor-vendor/source-registry-0/rustversion-1.0.23
biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/pk0nryz41jqq1ardi2s85b659x2hwvnc-biotite-1.7.1-vendor-vendor/source-registry-0/smallvec-1.15.2
biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/pk0nryz41jqq1ardi2s85b659x2hwvnc-biotite-1.7.1-vendor-vendor/source-registry-0/syn-2.0.119
biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/pk0nryz41jqq1ardi2s85b659x2hwvnc-biotite-1.7.1-vendor-vendor/source-registry-0/target-lexicon-0.13.5
biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/pk0nryz41jqq1ardi2s85b659x2hwvnc-biotite-1.7.1-vendor-vendor/source-registry-0/unicode-ident-1.0.24
biotite-1.7.1-vendor-vendor> Unpacking to /nix/store/pk0nryz41jqq1ardi2s85b659x2hwvnc-biotite-1.7.1-vendor-vendor/source-registry-0/unindent-0.2.4
building '/nix/store/nz4zhqdvp97fwc4wkpzg32slc6gm9w7b-python3.14-biotite-1.7.1.drv'
python3.14-biotite-1.7.1> Sourcing python-remove-tests-dir-hook
python3.14-biotite-1.7.1> Sourcing python-catch-conflicts-hook.sh
python3.14-biotite-1.7.1> Sourcing python-remove-bin-bytecode-hook.sh
python3.14-biotite-1.7.1> Sourcing pypa-build-hook
python3.14-biotite-1.7.1> Using pypaBuildPhase
python3.14-biotite-1.7.1> Sourcing python-runtime-deps-check-hook
python3.14-biotite-1.7.1> Using pythonRuntimeDepsCheckHook
python3.14-biotite-1.7.1> Sourcing pypa-install-hook
python3.14-biotite-1.7.1> Using pypaInstallPhase
python3.14-biotite-1.7.1> Sourcing python-imports-check-hook.sh
python3.14-biotite-1.7.1> Using pythonImportsCheckPhase
python3.14-biotite-1.7.1> Sourcing python-metadata-check-hook.sh
python3.14-biotite-1.7.1> Using pythonMetadataCheckPhase
python3.14-biotite-1.7.1> Sourcing python-namespaces-hook
python3.14-biotite-1.7.1> Sourcing python-catch-conflicts-hook.sh
python3.14-biotite-1.7.1> Sourcing setuptools-rust-hook
python3.14-biotite-1.7.1> Using checkPhaseThreadLimitHook
python3.14-biotite-1.7.1> Running phase: unpackPhase
python3.14-biotite-1.7.1> unpacking source archive /nix/store/aa831ygkbmvxv42nkc86z3zqsk5hgkcb-source
python3.14-biotite-1.7.1> source root is source
python3.14-biotite-1.7.1> Executing cargoSetupPostUnpackHook
python3.14-biotite-1.7.1> Finished cargoSetupPostUnpackHook
python3.14-biotite-1.7.1> setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "source/tests/util.py"
python3.14-biotite-1.7.1> Running phase: patchPhase
python3.14-biotite-1.7.1> Executing cargoSetupPostPatchHook
python3.14-biotite-1.7.1> Validating consistency between /build/source/Cargo.lock and /build/biotite-1.7.1-vendor-vendor/Cargo.lock
python3.14-biotite-1.7.1> Finished cargoSetupPostPatchHook
python3.14-biotite-1.7.1> Running phase: updateAutotoolsGnuConfigScriptsPhase
python3.14-biotite-1.7.1> Running phase: configurePhase
python3.14-biotite-1.7.1> no configure script, doing nothing
python3.14-biotite-1.7.1> Running phase: buildPhase
python3.14-biotite-1.7.1> Executing pypaBuildPhase
python3.14-biotite-1.7.1> Including all tracked files automatically
python3.14-biotite-1.7.1> Creating a wheel...
python3.14-biotite-1.7.1> pypa build flags: --no-isolation --outdir dist/ --wheel
python3.14-biotite-1.7.1> * Getting build dependencies for wheel...
python3.14-biotite-1.7.1> /nix/store/fkfl68z8s63y73y66398j7jrzvqdsddp-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/dist.py:483: SetuptoolsDeprecationWarning: Cannot find any files for the given pattern.
python3.14-biotite-1.7.1> !!
python3.14-biotite-1.7.1> 
python3.14-biotite-1.7.1>         ********************************************************************************
python3.14-biotite-1.7.1>         Pattern 'THIRDPARTY.yml' did not match any files.
python3.14-biotite-1.7.1> 
python3.14-biotite-1.7.1>         By 2027-Feb-18, you need to update your project and remove deprecated calls
python3.14-biotite-1.7.1>         or your builds will no longer be supported.
python3.14-biotite-1.7.1>         ********************************************************************************
python3.14-biotite-1.7.1> 
python3.14-biotite-1.7.1> !!
python3.14-biotite-1.7.1>   for path in sorted(cls._find_pattern(pattern, enforce_match))
python3.14-biotite-1.7.1> running egg_info
python3.14-biotite-1.7.1> creating src/biotite.egg-info
python3.14-biotite-1.7.1> writing src/biotite.egg-info/PKG-INFO
python3.14-biotite-1.7.1> writing dependency_links to src/biotite.egg-info/dependency_links.txt
python3.14-biotite-1.7.1> writing requirements to src/biotite.egg-info/requires.txt
python3.14-biotite-1.7.1> writing top-level names to src/biotite.egg-info/top_level.txt
python3.14-biotite-1.7.1> writing manifest file 'src/biotite.egg-info/SOURCES.txt'
python3.14-biotite-1.7.1> /nix/store/bha9483j81ig7w47zy7hr7xiv623llvy-python3.14-vcs-versioning-1.1.1/lib/python3.14/site-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.
python3.14-biotite-1.7.1>   return get_active_overrides().subprocess_timeout
python3.14-biotite-1.7.1> reading manifest file 'src/biotite.egg-info/SOURCES.txt'
python3.14-biotite-1.7.1> reading manifest template 'MANIFEST.in'
python3.14-biotite-1.7.1> warning: no files found matching 'src/biotite/structure/info/components.bcif'
python3.14-biotite-1.7.1> adding license file 'LICENSE.rst'
python3.14-biotite-1.7.1> writing manifest file 'src/biotite.egg-info/SOURCES.txt'
python3.14-biotite-1.7.1> * Building wheel...
python3.14-biotite-1.7.1> [ 1/14] Cythonizing src/biotite/sequence/align/banded.pyx
python3.14-biotite-1.7.1> [ 2/14] Cythonizing src/biotite/sequence/align/kmeralphabet.pyx
python3.14-biotite-1.7.1> [ 3/14] Cythonizing src/biotite/sequence/align/kmersimilarity.pyx
python3.14-biotite-1.7.1> [ 4/14] Cythonizing src/biotite/sequence/align/kmertable.pyx
python3.14-biotite-1.7.1> [ 5/14] Cythonizing src/biotite/sequence/align/localgapped.pyx
python3.14-biotite-1.7.1> [ 6/14] Cythonizing src/biotite/sequence/align/localungapped.pyx
python3.14-biotite-1.7.1> performance hint: src/biotite/sequence/align/localungapped.pyx:202:37: Index should be typed for more efficient access
python3.14-biotite-1.7.1> performance hint: src/biotite/sequence/align/localungapped.pyx:202:56: Index should be typed for more efficient access
python3.14-biotite-1.7.1> [ 7/14] Cythonizing src/biotite/sequence/align/multiple.pyx
python3.14-biotite-1.7.1> [ 8/14] Cythonizing src/biotite/sequence/align/pairwise.pyx
python3.14-biotite-1.7.1> [ 9/14] Cythonizing src/biotite/sequence/align/permutation.pyx
python3.14-biotite-1.7.1> [10/14] Cythonizing src/biotite/sequence/align/selector.pyx
python3.14-biotite-1.7.1> [11/14] Cythonizing src/biotite/sequence/align/tracetable.pyx
python3.14-biotite-1.7.1> [12/14] Cythonizing src/biotite/sequence/phylo/nj.pyx
python3.14-biotite-1.7.1> [13/14] Cythonizing src/biotite/sequence/phylo/tree.pyx
python3.14-biotite-1.7.1> [14/14] Cythonizing src/biotite/sequence/phylo/upgma.pyx
python3.14-biotite-1.7.1> /nix/store/fkfl68z8s63y73y66398j7jrzvqdsddp-python3.14-setuptools-83.0.0/lib/python3.14/site-packages/setuptools/dist.py:483: SetuptoolsDeprecationWarning: Cannot find any files for the given pattern.
python3.14-biotite-1.7.1> !!
python3.14-biotite-1.7.1> 
python3.14-biotite-1.7.1>         ********************************************************************************
python3.14-biotite-1.7.1>         Pattern 'THIRDPARTY.yml' did not match any files.
python3.14-biotite-1.7.1> 
python3.14-biotite-1.7.1>         By 2027-Feb-18, you need to update your project and remove deprecated calls
python3.14-biotite-1.7.1>         or your builds will no longer be supported.
python3.14-biotite-1.7.1>         ********************************************************************************
python3.14-biotite-1.7.1> 
python3.14-biotite-1.7.1> !!
python3.14-biotite-1.7.1>   for path in sorted(cls._find_pattern(pattern, enforce_match))
python3.14-biotite-1.7.1> running bdist_wheel
python3.14-biotite-1.7.1> running build
python3.14-biotite-1.7.1> running build_py
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite
python3.14-biotite-1.7.1> copying src/biotite/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite
python3.14-biotite-1.7.1> copying src/biotite/copyable.py -> build/lib.linux-x86_64-cpython-314/biotite
python3.14-biotite-1.7.1> copying src/biotite/file.py -> build/lib.linux-x86_64-cpython-314/biotite
python3.14-biotite-1.7.1> copying src/biotite/setup_ccd.py -> build/lib.linux-x86_64-cpython-314/biotite
python3.14-biotite-1.7.1> copying src/biotite/typing.py -> build/lib.linux-x86_64-cpython-314/biotite
python3.14-biotite-1.7.1> copying src/biotite/visualize.py -> build/lib.linux-x86_64-cpython-314/biotite
python3.14-biotite-1.7.1> copying src/biotite/version.py -> build/lib.linux-x86_64-cpython-314/biotite
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/interface
python3.14-biotite-1.7.1> copying src/biotite/interface/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/interface
python3.14-biotite-1.7.1> copying src/biotite/interface/version.py -> build/lib.linux-x86_64-cpython-314/biotite/interface
python3.14-biotite-1.7.1> copying src/biotite/interface/warning.py -> build/lib.linux-x86_64-cpython-314/biotite/interface
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/sequence
python3.14-biotite-1.7.1> copying src/biotite/sequence/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence
python3.14-biotite-1.7.1> copying src/biotite/sequence/alphabet.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence
python3.14-biotite-1.7.1> copying src/biotite/sequence/annotation.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence
python3.14-biotite-1.7.1> copying src/biotite/sequence/codon.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence
python3.14-biotite-1.7.1> copying src/biotite/sequence/profile.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence
python3.14-biotite-1.7.1> copying src/biotite/sequence/search.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence
python3.14-biotite-1.7.1> copying src/biotite/sequence/seqtypes.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence
python3.14-biotite-1.7.1> copying src/biotite/sequence/sequence.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/superimpose.py -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/atoms.py -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/basepairs.py -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/bonds.py -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/box.py -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/celllist.py -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/chains.py -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/charges.py -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/compare.py -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/connect.py -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/density.py -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/dotbracket.py -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/error.py -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/filter.py -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/geometry.py -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/hbond.py -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/integrity.py -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/mechanics.py -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/molecules.py -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/pseudoknots.py -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/rdf.py -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/repair.py -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/residues.py -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/rings.py -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/sasa.py -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/segments.py -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/sequence.py -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/sse.py -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/tm.py -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/transform.py -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/util.py -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/application
python3.14-biotite-1.7.1> copying src/biotite/application/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application
python3.14-biotite-1.7.1> copying src/biotite/application/application.py -> build/lib.linux-x86_64-cpython-314/biotite/application
python3.14-biotite-1.7.1> copying src/biotite/application/localapp.py -> build/lib.linux-x86_64-cpython-314/biotite/application
python3.14-biotite-1.7.1> copying src/biotite/application/msaapp.py -> build/lib.linux-x86_64-cpython-314/biotite/application
python3.14-biotite-1.7.1> copying src/biotite/application/util.py -> build/lib.linux-x86_64-cpython-314/biotite/application
python3.14-biotite-1.7.1> copying src/biotite/application/webapp.py -> build/lib.linux-x86_64-cpython-314/biotite/application
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/database
python3.14-biotite-1.7.1> copying src/biotite/database/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database
python3.14-biotite-1.7.1> copying src/biotite/database/error.py -> build/lib.linux-x86_64-cpython-314/biotite/database
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/interface/openmm
python3.14-biotite-1.7.1> copying src/biotite/interface/openmm/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/openmm
python3.14-biotite-1.7.1> copying src/biotite/interface/openmm/state.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/openmm
python3.14-biotite-1.7.1> copying src/biotite/interface/openmm/system.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/openmm
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/interface/pymol
python3.14-biotite-1.7.1> copying src/biotite/interface/pymol/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol
python3.14-biotite-1.7.1> copying src/biotite/interface/pymol/cgo.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol
python3.14-biotite-1.7.1> copying src/biotite/interface/pymol/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol
python3.14-biotite-1.7.1> copying src/biotite/interface/pymol/display.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol
python3.14-biotite-1.7.1> copying src/biotite/interface/pymol/object.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol
python3.14-biotite-1.7.1> copying src/biotite/interface/pymol/shapes.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol
python3.14-biotite-1.7.1> copying src/biotite/interface/pymol/startup.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/pymol
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/interface/rdkit
python3.14-biotite-1.7.1> copying src/biotite/interface/rdkit/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/rdkit
python3.14-biotite-1.7.1> copying src/biotite/interface/rdkit/mol.py -> build/lib.linux-x86_64-cpython-314/biotite/interface/rdkit
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/alignment.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/buckets.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/cigar.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/statistics.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics
python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics
python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/alignment.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics
python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/colorschemes.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics
python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/dendrogram.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics
python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/features.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics
python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/logo.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics
python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/plasmid.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io
python3.14-biotite-1.7.1> copying src/biotite/sequence/io/general.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io
python3.14-biotite-1.7.1> copying src/biotite/sequence/io/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo
python3.14-biotite-1.7.1> copying src/biotite/sequence/phylo/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal
python3.14-biotite-1.7.1> copying src/biotite/sequence/io/clustal/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal
python3.14-biotite-1.7.1> copying src/biotite/sequence/io/clustal/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal
python3.14-biotite-1.7.1> copying src/biotite/sequence/io/clustal/file.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta
python3.14-biotite-1.7.1> copying src/biotite/sequence/io/fasta/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta
python3.14-biotite-1.7.1> copying src/biotite/sequence/io/fasta/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta
python3.14-biotite-1.7.1> copying src/biotite/sequence/io/fasta/file.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq
python3.14-biotite-1.7.1> copying src/biotite/sequence/io/fastq/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq
python3.14-biotite-1.7.1> copying src/biotite/sequence/io/fastq/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq
python3.14-biotite-1.7.1> copying src/biotite/sequence/io/fastq/file.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank
python3.14-biotite-1.7.1> copying src/biotite/sequence/io/genbank/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank
python3.14-biotite-1.7.1> copying src/biotite/sequence/io/genbank/annotation.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank
python3.14-biotite-1.7.1> copying src/biotite/sequence/io/genbank/file.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank
python3.14-biotite-1.7.1> copying src/biotite/sequence/io/genbank/metadata.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank
python3.14-biotite-1.7.1> copying src/biotite/sequence/io/genbank/sequence.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff
python3.14-biotite-1.7.1> copying src/biotite/sequence/io/gff/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff
python3.14-biotite-1.7.1> copying src/biotite/sequence/io/gff/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff
python3.14-biotite-1.7.1> copying src/biotite/sequence/io/gff/file.py -> build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet
python3.14-biotite-1.7.1> copying src/biotite/structure/alphabet/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet
python3.14-biotite-1.7.1> copying src/biotite/structure/alphabet/encoder.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet
python3.14-biotite-1.7.1> copying src/biotite/structure/alphabet/i3d.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet
python3.14-biotite-1.7.1> copying src/biotite/structure/alphabet/layers.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet
python3.14-biotite-1.7.1> copying src/biotite/structure/alphabet/pb.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet
python3.14-biotite-1.7.1> copying src/biotite/structure/alphabet/unkerasify.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/structure/graphics
python3.14-biotite-1.7.1> copying src/biotite/structure/graphics/atoms.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/graphics
python3.14-biotite-1.7.1> copying src/biotite/structure/graphics/rna.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/graphics
python3.14-biotite-1.7.1> copying src/biotite/structure/graphics/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/graphics
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/structure/info
python3.14-biotite-1.7.1> copying src/biotite/structure/info/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info
python3.14-biotite-1.7.1> copying src/biotite/structure/info/atoms.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info
python3.14-biotite-1.7.1> copying src/biotite/structure/info/bonds.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info
python3.14-biotite-1.7.1> copying src/biotite/structure/info/ccd.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info
python3.14-biotite-1.7.1> copying src/biotite/structure/info/groups.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info
python3.14-biotite-1.7.1> copying src/biotite/structure/info/masses.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info
python3.14-biotite-1.7.1> copying src/biotite/structure/info/misc.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info
python3.14-biotite-1.7.1> copying src/biotite/structure/info/radii.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info
python3.14-biotite-1.7.1> copying src/biotite/structure/info/standardize.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/info
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/structure/io
python3.14-biotite-1.7.1> copying src/biotite/structure/io/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io
python3.14-biotite-1.7.1> copying src/biotite/structure/io/general.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io
python3.14-biotite-1.7.1> copying src/biotite/structure/io/trajfile.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io
python3.14-biotite-1.7.1> copying src/biotite/structure/io/util.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/dcd
python3.14-biotite-1.7.1> copying src/biotite/structure/io/dcd/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/dcd
python3.14-biotite-1.7.1> copying src/biotite/structure/io/dcd/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/dcd
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/gro
python3.14-biotite-1.7.1> copying src/biotite/structure/io/gro/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/gro
python3.14-biotite-1.7.1> copying src/biotite/structure/io/gro/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/gro
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol
python3.14-biotite-1.7.1> copying src/biotite/structure/io/mol/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol
python3.14-biotite-1.7.1> copying src/biotite/structure/io/mol/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol
python3.14-biotite-1.7.1> copying src/biotite/structure/io/mol/ctab.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol
python3.14-biotite-1.7.1> copying src/biotite/structure/io/mol/header.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol
python3.14-biotite-1.7.1> copying src/biotite/structure/io/mol/mol.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol
python3.14-biotite-1.7.1> copying src/biotite/structure/io/mol/sdf.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/netcdf
python3.14-biotite-1.7.1> copying src/biotite/structure/io/netcdf/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/netcdf
python3.14-biotite-1.7.1> copying src/biotite/structure/io/netcdf/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/netcdf
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb
python3.14-biotite-1.7.1> copying src/biotite/structure/io/pdb/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb
python3.14-biotite-1.7.1> copying src/biotite/structure/io/pdb/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb
python3.14-biotite-1.7.1> copying src/biotite/structure/io/pdb/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt
python3.14-biotite-1.7.1> copying src/biotite/structure/io/pdbqt/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt
python3.14-biotite-1.7.1> copying src/biotite/structure/io/pdbqt/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt
python3.14-biotite-1.7.1> copying src/biotite/structure/io/pdbqt/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx
python3.14-biotite-1.7.1> copying src/biotite/structure/io/pdbx/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx
python3.14-biotite-1.7.1> copying src/biotite/structure/io/pdbx/bcif.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx
python3.14-biotite-1.7.1> copying src/biotite/structure/io/pdbx/cif.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx
python3.14-biotite-1.7.1> copying src/biotite/structure/io/pdbx/component.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx
python3.14-biotite-1.7.1> copying src/biotite/structure/io/pdbx/compress.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx
python3.14-biotite-1.7.1> copying src/biotite/structure/io/pdbx/convert.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx
python3.14-biotite-1.7.1> copying src/biotite/structure/io/pdbx/encoding.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/trr
python3.14-biotite-1.7.1> copying src/biotite/structure/io/trr/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/trr
python3.14-biotite-1.7.1> copying src/biotite/structure/io/trr/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/trr
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/structure/io/xtc
python3.14-biotite-1.7.1> copying src/biotite/structure/io/xtc/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/xtc
python3.14-biotite-1.7.1> copying src/biotite/structure/io/xtc/file.py -> build/lib.linux-x86_64-cpython-314/biotite/structure/io/xtc
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/application/autodock
python3.14-biotite-1.7.1> copying src/biotite/application/autodock/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/autodock
python3.14-biotite-1.7.1> copying src/biotite/application/autodock/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/autodock
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/application/blast
python3.14-biotite-1.7.1> copying src/biotite/application/blast/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/blast
python3.14-biotite-1.7.1> copying src/biotite/application/blast/alignment.py -> build/lib.linux-x86_64-cpython-314/biotite/application/blast
python3.14-biotite-1.7.1> copying src/biotite/application/blast/webapp.py -> build/lib.linux-x86_64-cpython-314/biotite/application/blast
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/application/clustalo
python3.14-biotite-1.7.1> copying src/biotite/application/clustalo/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/clustalo
python3.14-biotite-1.7.1> copying src/biotite/application/clustalo/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/clustalo
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/application/dssp
python3.14-biotite-1.7.1> copying src/biotite/application/dssp/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/dssp
python3.14-biotite-1.7.1> copying src/biotite/application/dssp/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/dssp
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/application/mafft
python3.14-biotite-1.7.1> copying src/biotite/application/mafft/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/mafft
python3.14-biotite-1.7.1> copying src/biotite/application/mafft/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/mafft
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/application/muscle
python3.14-biotite-1.7.1> copying src/biotite/application/muscle/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/muscle
python3.14-biotite-1.7.1> copying src/biotite/application/muscle/app3.py -> build/lib.linux-x86_64-cpython-314/biotite/application/muscle
python3.14-biotite-1.7.1> copying src/biotite/application/muscle/app5.py -> build/lib.linux-x86_64-cpython-314/biotite/application/muscle
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/application/sra
python3.14-biotite-1.7.1> copying src/biotite/application/sra/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/sra
python3.14-biotite-1.7.1> copying src/biotite/application/sra/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/sra
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/application/tantan
python3.14-biotite-1.7.1> copying src/biotite/application/tantan/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/tantan
python3.14-biotite-1.7.1> copying src/biotite/application/tantan/app.py -> build/lib.linux-x86_64-cpython-314/biotite/application/tantan
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/application/viennarna
python3.14-biotite-1.7.1> copying src/biotite/application/viennarna/rnaalifold.py -> build/lib.linux-x86_64-cpython-314/biotite/application/viennarna
python3.14-biotite-1.7.1> copying src/biotite/application/viennarna/rnafold.py -> build/lib.linux-x86_64-cpython-314/biotite/application/viennarna
python3.14-biotite-1.7.1> copying src/biotite/application/viennarna/rnaplot.py -> build/lib.linux-x86_64-cpython-314/biotite/application/viennarna
python3.14-biotite-1.7.1> copying src/biotite/application/viennarna/util.py -> build/lib.linux-x86_64-cpython-314/biotite/application/viennarna
python3.14-biotite-1.7.1> copying src/biotite/application/viennarna/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/application/viennarna
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/database/pubchem
python3.14-biotite-1.7.1> copying src/biotite/database/pubchem/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database/pubchem
python3.14-biotite-1.7.1> copying src/biotite/database/pubchem/download.py -> build/lib.linux-x86_64-cpython-314/biotite/database/pubchem
python3.14-biotite-1.7.1> copying src/biotite/database/pubchem/error.py -> build/lib.linux-x86_64-cpython-314/biotite/database/pubchem
python3.14-biotite-1.7.1> copying src/biotite/database/pubchem/query.py -> build/lib.linux-x86_64-cpython-314/biotite/database/pubchem
python3.14-biotite-1.7.1> copying src/biotite/database/pubchem/throttle.py -> build/lib.linux-x86_64-cpython-314/biotite/database/pubchem
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/database/rcsb
python3.14-biotite-1.7.1> copying src/biotite/database/rcsb/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database/rcsb
python3.14-biotite-1.7.1> copying src/biotite/database/rcsb/download.py -> build/lib.linux-x86_64-cpython-314/biotite/database/rcsb
python3.14-biotite-1.7.1> copying src/biotite/database/rcsb/query.py -> build/lib.linux-x86_64-cpython-314/biotite/database/rcsb
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/database/uniprot
python3.14-biotite-1.7.1> copying src/biotite/database/uniprot/check.py -> build/lib.linux-x86_64-cpython-314/biotite/database/uniprot
python3.14-biotite-1.7.1> copying src/biotite/database/uniprot/download.py -> build/lib.linux-x86_64-cpython-314/biotite/database/uniprot
python3.14-biotite-1.7.1> copying src/biotite/database/uniprot/query.py -> build/lib.linux-x86_64-cpython-314/biotite/database/uniprot
python3.14-biotite-1.7.1> copying src/biotite/database/uniprot/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database/uniprot
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/database/afdb
python3.14-biotite-1.7.1> copying src/biotite/database/afdb/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database/afdb
python3.14-biotite-1.7.1> copying src/biotite/database/afdb/download.py -> build/lib.linux-x86_64-cpython-314/biotite/database/afdb
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/database/entrez
python3.14-biotite-1.7.1> copying src/biotite/database/entrez/__init__.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez
python3.14-biotite-1.7.1> copying src/biotite/database/entrez/check.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez
python3.14-biotite-1.7.1> copying src/biotite/database/entrez/dbnames.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez
python3.14-biotite-1.7.1> copying src/biotite/database/entrez/download.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez
python3.14-biotite-1.7.1> copying src/biotite/database/entrez/key.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez
python3.14-biotite-1.7.1> copying src/biotite/database/entrez/query.py -> build/lib.linux-x86_64-cpython-314/biotite/database/entrez
python3.14-biotite-1.7.1> running egg_info
python3.14-biotite-1.7.1> writing src/biotite.egg-info/PKG-INFO
python3.14-biotite-1.7.1> writing dependency_links to src/biotite.egg-info/dependency_links.txt
python3.14-biotite-1.7.1> writing requirements to src/biotite.egg-info/requires.txt
python3.14-biotite-1.7.1> writing top-level names to src/biotite.egg-info/top_level.txt
python3.14-biotite-1.7.1> /nix/store/bha9483j81ig7w47zy7hr7xiv623llvy-python3.14-vcs-versioning-1.1.1/lib/python3.14/site-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.
python3.14-biotite-1.7.1>   return get_active_overrides().subprocess_timeout
python3.14-biotite-1.7.1> reading manifest file 'src/biotite.egg-info/SOURCES.txt'
python3.14-biotite-1.7.1> reading manifest template 'MANIFEST.in'
python3.14-biotite-1.7.1> warning: no files found matching 'src/biotite/structure/info/components.bcif'
python3.14-biotite-1.7.1> adding license file 'LICENSE.rst'
python3.14-biotite-1.7.1> writing manifest file 'src/biotite.egg-info/SOURCES.txt'
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/rust
python3.14-biotite-1.7.1> copying src/rust/lib.rs -> build/lib.linux-x86_64-cpython-314/rust
python3.14-biotite-1.7.1> copying src/rust/util.rs -> build/lib.linux-x86_64-cpython-314/rust
python3.14-biotite-1.7.1> copying src/biotite/py.typed -> build/lib.linux-x86_64-cpython-314/biotite
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/rust/sequence
python3.14-biotite-1.7.1> copying src/rust/sequence/codec.rs -> build/lib.linux-x86_64-cpython-314/rust/sequence
python3.14-biotite-1.7.1> copying src/rust/sequence/mod.rs -> build/lib.linux-x86_64-cpython-314/rust/sequence
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/rust/structure
python3.14-biotite-1.7.1> copying src/rust/structure/bonds.rs -> build/lib.linux-x86_64-cpython-314/rust/structure
python3.14-biotite-1.7.1> copying src/rust/structure/celllist.rs -> build/lib.linux-x86_64-cpython-314/rust/structure
python3.14-biotite-1.7.1> copying src/rust/structure/charges.rs -> build/lib.linux-x86_64-cpython-314/rust/structure
python3.14-biotite-1.7.1> copying src/rust/structure/connect.rs -> build/lib.linux-x86_64-cpython-314/rust/structure
python3.14-biotite-1.7.1> copying src/rust/structure/mod.rs -> build/lib.linux-x86_64-cpython-314/rust/structure
python3.14-biotite-1.7.1> copying src/rust/structure/sasa.rs -> build/lib.linux-x86_64-cpython-314/rust/structure
python3.14-biotite-1.7.1> copying src/rust/structure/util.rs -> build/lib.linux-x86_64-cpython-314/rust/structure
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/rust/structure/io
python3.14-biotite-1.7.1> copying src/rust/structure/io/mod.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb
python3.14-biotite-1.7.1> copying src/rust/structure/io/pdb/file.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb
python3.14-biotite-1.7.1> copying src/rust/structure/io/pdb/hybrid36.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb
python3.14-biotite-1.7.1> copying src/rust/structure/io/pdb/mod.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/rust/structure/io/pdbx
python3.14-biotite-1.7.1> copying src/rust/structure/io/pdbx/encoding.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io/pdbx
python3.14-biotite-1.7.1> copying src/rust/structure/io/pdbx/mod.rs -> build/lib.linux-x86_64-cpython-314/rust/structure/io/pdbx
python3.14-biotite-1.7.1> copying src/biotite/sequence/codon_tables.txt -> build/lib.linux-x86_64-cpython-314/biotite/sequence
python3.14-biotite-1.7.1> copying src/biotite/structure/atoms.pyi -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/bonds.pyi -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/celllist.pyi -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/spacegroups.json -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/structure/spacegroups.license -> build/lib.linux-x86_64-cpython-314/biotite/structure
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/banded.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/banded.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/banded.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/kmeralphabet.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/kmeralphabet.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/kmeralphabet.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/kmersimilarity.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/kmersimilarity.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/kmersimilarity.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/kmertable.cpp -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/kmertable.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/kmertable.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/localgapped.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/localgapped.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/localgapped.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/localungapped.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/localungapped.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/localungapped.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/multiple.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/multiple.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/multiple.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/pairwise.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/pairwise.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/pairwise.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/permutation.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/permutation.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/permutation.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/primes.txt -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/selector.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/selector.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/selector.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/tracetable.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/tracetable.pxd -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/tracetable.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align
python3.14-biotite-1.7.1> copying src/biotite/sequence/phylo/nj.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo
python3.14-biotite-1.7.1> copying src/biotite/sequence/phylo/nj.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo
python3.14-biotite-1.7.1> copying src/biotite/sequence/phylo/nj.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo
python3.14-biotite-1.7.1> copying src/biotite/sequence/phylo/tree.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo
python3.14-biotite-1.7.1> copying src/biotite/sequence/phylo/tree.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo
python3.14-biotite-1.7.1> copying src/biotite/sequence/phylo/tree.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo
python3.14-biotite-1.7.1> copying src/biotite/sequence/phylo/upgma.c -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo
python3.14-biotite-1.7.1> copying src/biotite/sequence/phylo/upgma.pyi -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo
python3.14-biotite-1.7.1> copying src/biotite/sequence/phylo/upgma.pyx -> build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/3Di.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM100.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM30.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM35.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM40.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM45.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM50.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM50_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM50_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM50_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM55.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM60.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM62.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM62_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM62_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM62_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM65.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM70.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM75.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM80.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM85.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUM90.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/BLOSUMN.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/CorBLOSUM49_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/CorBLOSUM57_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/CorBLOSUM57_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/CorBLOSUM61_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/CorBLOSUM66_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/CorBLOSUM67_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/DAYHOFF.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/GONNET.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/IDENTITY.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/MATCH.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/NUC.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM10.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM100.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM110.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM120.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM130.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM140.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM150.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM160.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM170.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM180.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM190.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM20.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM200.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM210.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM220.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM230.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM240.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM250.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM260.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM270.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM280.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM290.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM30.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM300.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM310.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM320.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM330.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM340.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM350.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM360.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM370.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM380.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM390.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM40.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM400.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM410.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM420.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM430.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM440.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM450.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM460.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM470.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM480.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM490.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM50.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM500.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM60.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM70.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM80.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PAM90.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PB.license -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/PB.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/RBLOSUM52_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/RBLOSUM59_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/RBLOSUM59_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/RBLOSUM64_5.0.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/RBLOSUM69_13p.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying src/biotite/sequence/align/matrix_data/RBLOSUM69_14.3.mat -> build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> creating build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/3di_flower.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/autumn.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/blossom.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/clustalx_dna.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/clustalx_protein.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/flower.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/jalview_buried.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/jalview_hydrophobicity.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/jalview_prop_helix.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/jalview_prop_strand.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/jalview_prop_turn.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/jalview_taylor.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/jalview_zappo.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/ocean.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/pb_flower.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/rainbow_dna.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/rainbow_protein.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/spring.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/sunset.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying src/biotite/sequence/graphics/color_schemes/wither.json -> build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying src/biotite/structure/alphabet/encoder_weights_3di.kerasify -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet
python3.14-biotite-1.7.1> copying src/biotite/structure/alphabet/pb.license -> build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet
python3.14-biotite-1.7.1> copying src/biotite/structure/info/atom_masses.json -> build/lib.linux-x86_64-cpython-314/biotite/structure/info
python3.14-biotite-1.7.1> running build_ext
python3.14-biotite-1.7.1> building 'biotite.sequence.align.banded' extension
python3.14-biotite-1.7.1> creating build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align
python3.14-biotite-1.7.1> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/lbz67b34qlh77bpcisd4b4wsv5n4x0yx-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/include/python3.14 -c src/biotite/sequence/align/banded.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/banded.o
python3.14-biotite-1.7.1> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/banded.o -L/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/banded.cpython-314-x86_64-linux-gnu.so
python3.14-biotite-1.7.1> building 'biotite.sequence.align.kmeralphabet' extension
python3.14-biotite-1.7.1> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/lbz67b34qlh77bpcisd4b4wsv5n4x0yx-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/include/python3.14 -c src/biotite/sequence/align/kmeralphabet.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmeralphabet.o
python3.14-biotite-1.7.1> In file included from src/biotite/sequence/align/kmeralphabet.c:1401:
python3.14-biotite-1.7.1> In function ‘__Pyx_XCLEAR_MEMVIEW’,
python3.14-biotite-1.7.1>     inlined from ‘__pyx_pf_7biotite_8sequence_5align_12kmeralphabet_12KmerAlphabet_20_split’ at src/biotite/sequence/align/kmeralphabet.c:23866:3,
python3.14-biotite-1.7.1>     inlined from ‘__pyx_pw_7biotite_8sequence_5align_12kmeralphabet_12KmerAlphabet_21_split’ at src/biotite/sequence/align/kmeralphabet.c:23574:13:
python3.14-biotite-1.7.1> src/biotite/sequence/align/kmeralphabet.c:1417:46: warning: ‘__atomic_fetch_sub_4’ writing 4 bytes into a region of size 0 overflows the destination [-Wstringop-overflow=]
python3.14-biotite-1.7.1>  1417 |     #define __pyx_atomic_decr_acq_rel(value) atomic_fetch_sub_explicit(value, 1, memory_order_acq_rel)
python3.14-biotite-1.7.1>       |                                              ^~~~~~~~~~~~~~~~~~~~~~~~~
python3.14-biotite-1.7.1> src/biotite/sequence/align/kmeralphabet.c:1628:13: note: in expansion of macro ‘__pyx_atomic_decr_acq_rel’
python3.14-biotite-1.7.1>  1628 |             __pyx_atomic_decr_acq_rel(__pyx_get_slice_count_pointer(memview))
python3.14-biotite-1.7.1>       |             ^~~~~~~~~~~~~~~~~~~~~~~~~
python3.14-biotite-1.7.1> src/biotite/sequence/align/kmeralphabet.c:42072:29: note: in expansion of macro ‘__pyx_sub_acquisition_count’
python3.14-biotite-1.7.1> 42072 |     old_acquisition_count = __pyx_sub_acquisition_count(memview);
python3.14-biotite-1.7.1>       |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
python3.14-biotite-1.7.1> In function ‘__pyx_pw_7biotite_8sequence_5align_12kmeralphabet_12KmerAlphabet_21_split’:
python3.14-biotite-1.7.1> cc1: note: destination object is likely at address zero
python3.14-biotite-1.7.1> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmeralphabet.o -L/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmeralphabet.cpython-314-x86_64-linux-gnu.so
python3.14-biotite-1.7.1> building 'biotite.sequence.align.kmersimilarity' extension
python3.14-biotite-1.7.1> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/lbz67b34qlh77bpcisd4b4wsv5n4x0yx-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/include/python3.14 -c src/biotite/sequence/align/kmersimilarity.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmersimilarity.o
python3.14-biotite-1.7.1> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmersimilarity.o -L/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmersimilarity.cpython-314-x86_64-linux-gnu.so
python3.14-biotite-1.7.1> building 'biotite.sequence.align.kmertable' extension
python3.14-biotite-1.7.1> g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/lbz67b34qlh77bpcisd4b4wsv5n4x0yx-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/include/python3.14 -c src/biotite/sequence/align/kmertable.cpp -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmertable.o
python3.14-biotite-1.7.1> g++ -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/kmertable.o -L/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmertable.cpython-314-x86_64-linux-gnu.so
python3.14-biotite-1.7.1> building 'biotite.sequence.align.localgapped' extension
python3.14-biotite-1.7.1> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/lbz67b34qlh77bpcisd4b4wsv5n4x0yx-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/include/python3.14 -c src/biotite/sequence/align/localgapped.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/localgapped.o
python3.14-biotite-1.7.1> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/localgapped.o -L/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localgapped.cpython-314-x86_64-linux-gnu.so
python3.14-biotite-1.7.1> building 'biotite.sequence.align.localungapped' extension
python3.14-biotite-1.7.1> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/lbz67b34qlh77bpcisd4b4wsv5n4x0yx-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/include/python3.14 -c src/biotite/sequence/align/localungapped.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/localungapped.o
python3.14-biotite-1.7.1> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/localungapped.o -L/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localungapped.cpython-314-x86_64-linux-gnu.so
python3.14-biotite-1.7.1> building 'biotite.sequence.align.multiple' extension
python3.14-biotite-1.7.1> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/lbz67b34qlh77bpcisd4b4wsv5n4x0yx-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/include/python3.14 -c src/biotite/sequence/align/multiple.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/multiple.o
python3.14-biotite-1.7.1> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/multiple.o -L/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/multiple.cpython-314-x86_64-linux-gnu.so
python3.14-biotite-1.7.1> building 'biotite.sequence.align.pairwise' extension
python3.14-biotite-1.7.1> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/lbz67b34qlh77bpcisd4b4wsv5n4x0yx-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/include/python3.14 -c src/biotite/sequence/align/pairwise.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/pairwise.o
python3.14-biotite-1.7.1> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/pairwise.o -L/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/pairwise.cpython-314-x86_64-linux-gnu.so
python3.14-biotite-1.7.1> building 'biotite.sequence.align.permutation' extension
python3.14-biotite-1.7.1> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/lbz67b34qlh77bpcisd4b4wsv5n4x0yx-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/include/python3.14 -c src/biotite/sequence/align/permutation.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/permutation.o
python3.14-biotite-1.7.1> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/permutation.o -L/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/permutation.cpython-314-x86_64-linux-gnu.so
python3.14-biotite-1.7.1> building 'biotite.sequence.align.selector' extension
python3.14-biotite-1.7.1> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/lbz67b34qlh77bpcisd4b4wsv5n4x0yx-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/include/python3.14 -c src/biotite/sequence/align/selector.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/selector.o
python3.14-biotite-1.7.1> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/selector.o -L/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/selector.cpython-314-x86_64-linux-gnu.so
python3.14-biotite-1.7.1> building 'biotite.sequence.align.tracetable' extension
python3.14-biotite-1.7.1> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/lbz67b34qlh77bpcisd4b4wsv5n4x0yx-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/include/python3.14 -c src/biotite/sequence/align/tracetable.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/tracetable.o
python3.14-biotite-1.7.1> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/align/tracetable.o -L/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/align/tracetable.cpython-314-x86_64-linux-gnu.so
python3.14-biotite-1.7.1> building 'biotite.sequence.phylo.nj' extension
python3.14-biotite-1.7.1> creating build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo
python3.14-biotite-1.7.1> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/lbz67b34qlh77bpcisd4b4wsv5n4x0yx-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/include/python3.14 -c src/biotite/sequence/phylo/nj.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/nj.o
python3.14-biotite-1.7.1> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/nj.o -L/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/nj.cpython-314-x86_64-linux-gnu.so
python3.14-biotite-1.7.1> building 'biotite.sequence.phylo.tree' extension
python3.14-biotite-1.7.1> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/lbz67b34qlh77bpcisd4b4wsv5n4x0yx-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/include/python3.14 -c src/biotite/sequence/phylo/tree.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/tree.o
python3.14-biotite-1.7.1> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/tree.o -L/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/tree.cpython-314-x86_64-linux-gnu.so
python3.14-biotite-1.7.1> building 'biotite.sequence.phylo.upgma' extension
python3.14-biotite-1.7.1> gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/nix/store/lbz67b34qlh77bpcisd4b4wsv5n4x0yx-python3.14-numpy-2.5.1/lib/python3.14/site-packages/numpy/_core/include -I/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/include/python3.14 -c src/biotite/sequence/phylo/upgma.c -o build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/upgma.o
python3.14-biotite-1.7.1> gcc -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.7.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-2.42.2-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-6.6/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.8.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-3.6.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-3.53.3/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-4.0.1/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.8.2/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zstd-1.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bluez-headers-5.86/lib -L/nix/store/2nndxyf3phkb5aggxm3c16sapa0f49kz-tzdata-2026c/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-1.26-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-8.3p3/lib build/temp.linux-x86_64-cpython-314/src/biotite/sequence/phylo/upgma.o -L/nix/store/gxzhl7aaiid7zp3y47jqqiq7zg5mqpwp-python3-3.14.6/lib -o build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/upgma.cpython-314-x86_64-linux-gnu.so
python3.14-biotite-1.7.1> running build_rust
python3.14-biotite-1.7.1> cargo rustc --lib --message-format=json-render-diagnostics --manifest-path Cargo.toml --release -v --features pyo3/extension-module --crate-type cdylib --target x86_64-unknown-linux-gnu
python3.14-biotite-1.7.1> warning: failed to save last-use data
python3.14-biotite-1.7.1> This may prevent cargo from accurately tracking what is being used in its global cache. This information is used for automatically removing unused data in the cache.
python3.14-biotite-1.7.1> 
python3.14-biotite-1.7.1> unable to open database file: /homeless-shelter/.cargo/.global-cache
python3.14-biotite-1.7.1> 
python3.14-biotite-1.7.1> Caused by:
python3.14-biotite-1.7.1>   Error code 14: unable to open database file
python3.14-biotite-1.7.1>    Compiling target-lexicon v0.13.5
python3.14-biotite-1.7.1>    Compiling autocfg v1.5.1
python3.14-biotite-1.7.1>    Compiling proc-macro2 v1.0.107
python3.14-biotite-1.7.1>    Compiling quote v1.0.47
python3.14-biotite-1.7.1>    Compiling unicode-ident v1.0.24
python3.14-biotite-1.7.1>    Compiling libc v0.2.189
python3.14-biotite-1.7.1>    Compiling heck v0.5.0
python3.14-biotite-1.7.1>    Compiling rawpointer v0.2.1
python3.14-biotite-1.7.1>    Compiling unindent v0.2.4
python3.14-biotite-1.7.1>    Compiling once_cell v1.21.4
python3.14-biotite-1.7.1>    Compiling indoc v2.0.7
python3.14-biotite-1.7.1>    Compiling rustc-hash v2.1.3
python3.14-biotite-1.7.1>    Compiling either v1.17.0
python3.14-biotite-1.7.1>    Compiling smallvec v1.15.2
python3.14-biotite-1.7.1>      Running `rustc --crate-name build_script_build --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/target-lexicon-0.13.5/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no --warn=unexpected_cfgs --check-cfg 'cfg(feature, values("rust_1_40", "cargo-clippy"))' -C debug-assertions=off --cfg 'feature="default"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("arch_z80", "arch_zkasm", "default", "serde", "serde_support", "std"))' -C metadata=12ed681be214ce39 -C extra-filename=-2ffe4a44fd514c8f --out-dir /build/source/target/release/build/target-lexicon-2ffe4a44fd514c8f -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`
python3.14-biotite-1.7.1>      Running `rustc --crate-name autocfg --edition=2015 /build/biotite-1.7.1-vendor-vendor/source-registry-0/autocfg-1.5.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=009e1ae2d71cba2a -C extra-filename=-b29aa6b532941b60 --out-dir /build/source/target/release/deps -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`
python3.14-biotite-1.7.1>      Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/proc-macro2-1.0.107/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="proc-macro"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "nightly", "proc-macro", "span-locations"))' -C metadata=aee344725420ad49 -C extra-filename=-3da98953dfec2a54 --out-dir /build/source/target/release/build/proc-macro2-3da98953dfec2a54 -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`
python3.14-biotite-1.7.1>      Running `rustc --crate-name unicode_ident --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/unicode-ident-1.0.24/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=35613a9a50cfa8d0 -C extra-filename=-24b354c2597e0ab2 --out-dir /build/source/target/release/deps -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`
python3.14-biotite-1.7.1>      Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/libc-0.2.189/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no --allow=unused_qualifications '--warn=clippy::unnecessary_semicolon' '--allow=clippy::unnecessary_cast' '--warn=clippy::ptr_as_ptr' '--allow=clippy::non_minimal_cfg' '--allow=clippy::missing_safety_doc' '--warn=clippy::map_unwrap_or' '--warn=clippy::manual_assert' '--allow=clippy::identity_op' '--warn=clippy::explicit_iter_loop' -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("align", "const-extern-fn", "default", "extra_traits", "rustc-dep-of-std", "rustc-std-workspace-core", "std", "use_std"))' -C metadata=e66e84e78d5314fc -C extra-filename=-af9c681df7748733 --out-dir /build/source/target/release/build/libc-af9c681df7748733 -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`
python3.14-biotite-1.7.1>      Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/quote-1.0.47/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="proc-macro"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "proc-macro"))' -C metadata=4ddd3bf2da6e355d -C extra-filename=-6d6617ed9b73626d --out-dir /build/source/target/release/build/quote-6d6617ed9b73626d -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`
python3.14-biotite-1.7.1>      Running `rustc --crate-name heck --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/heck-0.5.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=207115b67ce9596d -C extra-filename=-2b93fc40042d2031 --out-dir /build/source/target/release/deps -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow`
python3.14-biotite-1.7.1>      Running `rustc --crate-name rawpointer --edition=2015 /build/biotite-1.7.1-vendor-vendor/source-registry-0/rawpointer-0.2.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=f8859574040205e8 -C extra-filename=-5013ff441e71e220 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes`
python3.14-biotite-1.7.1>      Running `rustc --crate-name unindent --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/unindent-0.2.4/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=932d72a21484907d -C extra-filename=-bc062914628acc6a --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes`
python3.14-biotite-1.7.1>      Running `rustc --crate-name once_cell --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/once_cell-1.21.4/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="alloc"' --cfg 'feature="default"' --cfg 'feature="race"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("alloc", "atomic-polyfill", "critical-section", "default", "parking_lot", "portable-atomic", "race", "std", "unstable"))' -C metadata=0be16e6eaee9b76a -C extra-filename=-cda02b276aeda687 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes`
python3.14-biotite-1.7.1>      Running `rustc --crate-name indoc --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/indoc-2.0.7/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type proc-macro --emit=dep-info,link -C prefer-dynamic -C embed-bitcode=no -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=ce88fdfe66d70257 -C extra-filename=-13e7c5fbcec73ab6 --out-dir /build/source/target/release/deps -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern proc_macro --cap-lints allow`
python3.14-biotite-1.7.1>      Running `rustc --crate-name rustc_hash --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/rustc-hash-2.1.3/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "nightly", "rand", "std"))' -C metadata=42c9ffc4276c6a11 -C extra-filename=-14db18c40b41c22e --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes`
python3.14-biotite-1.7.1>      Running `rustc --crate-name either --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/either-1.17.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="std"' --cfg 'feature="use_std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "serde", "std", "use_std"))' -C metadata=05e5376be50adbe6 -C extra-filename=-2be2039525fb555a --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes`
python3.14-biotite-1.7.1>      Running `rustc --crate-name smallvec --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/smallvec-1.15.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("arbitrary", "bincode", "const_generics", "const_new", "debugger_visualizer", "drain_filter", "drain_keep_rest", "impl_bincode", "malloc_size_of", "may_dangle", "serde", "specialization", "union", "unty", "write"))' -C metadata=c9ed92f5d4684437 -C extra-filename=-e94efb49232f0947 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes`
python3.14-biotite-1.7.1>    Compiling itertools v0.14.0
python3.14-biotite-1.7.1>      Running `rustc --crate-name itertools --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/itertools-0.14.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="use_alloc"' --cfg 'feature="use_std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "use_alloc", "use_std"))' -C metadata=cee3a197014bbb9f -C extra-filename=-4ce561eacd3e7b46 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern either=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libeither-2be2039525fb555a.rmeta --cap-lints allow -Cforce-frame-pointers=yes`
python3.14-biotite-1.7.1>      Running `/build/source/target/release/build/quote-6d6617ed9b73626d/build-script-build`
python3.14-biotite-1.7.1>    Compiling num-traits v0.2.19
python3.14-biotite-1.7.1>    Compiling matrixmultiply v0.3.11
python3.14-biotite-1.7.1>    Compiling memoffset v0.9.1
python3.14-biotite-1.7.1>      Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/num-traits-0.2.19/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="i128"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "i128", "libm", "std"))' -C metadata=94a08a0b43272862 -C extra-filename=-61bc2454960b47dc --out-dir /build/source/target/release/build/num-traits-61bc2454960b47dc -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern autocfg=/build/source/target/release/deps/libautocfg-b29aa6b532941b60.rlib --cap-lints allow`
python3.14-biotite-1.7.1>      Running `rustc --crate-name build_script_build --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/matrixmultiply-0.3.11/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="cgemm"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("avx512", "cgemm", "constconf", "default", "num_cpus", "once_cell", "std", "thread-tree", "threading"))' -C metadata=3478fccfe3ed330d -C extra-filename=-2e25874a8497635a --out-dir /build/source/target/release/build/matrixmultiply-2e25874a8497635a -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern autocfg=/build/source/target/release/deps/libautocfg-b29aa6b532941b60.rlib --cap-lints allow`
python3.14-biotite-1.7.1>      Running `rustc --crate-name build_script_build --edition=2015 /build/biotite-1.7.1-vendor-vendor/source-registry-0/memoffset-0.9.1/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "unstable_const", "unstable_offset_of"))' -C metadata=20b18284fa533a6a -C extra-filename=-79c46efb3ba21a25 --out-dir /build/source/target/release/build/memoffset-79c46efb3ba21a25 -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern autocfg=/build/source/target/release/deps/libautocfg-b29aa6b532941b60.rlib --cap-lints allow`
python3.14-biotite-1.7.1>      Running `/build/source/target/release/build/proc-macro2-3da98953dfec2a54/build-script-build`
python3.14-biotite-1.7.1>      Running `/build/source/target/release/build/libc-af9c681df7748733/build-script-build`
python3.14-biotite-1.7.1>      Running `rustc --crate-name libc --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/libc-0.2.189/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --allow=unused_qualifications '--warn=clippy::unnecessary_semicolon' '--allow=clippy::unnecessary_cast' '--warn=clippy::ptr_as_ptr' '--allow=clippy::non_minimal_cfg' '--allow=clippy::missing_safety_doc' '--warn=clippy::map_unwrap_or' '--warn=clippy::manual_assert' '--allow=clippy::identity_op' '--warn=clippy::explicit_iter_loop' --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("align", "const-extern-fn", "default", "extra_traits", "rustc-dep-of-std", "rustc-std-workspace-core", "std", "use_std"))' -C metadata=816559f477bcb06a -C extra-filename=-2e4dae809765e2a7 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes --cfg freebsd12 --check-cfg 'cfg(emscripten_old_stat_abi)' --check-cfg 'cfg(espidf_picolibc)' --check-cfg 'cfg(espidf_time32)' --check-cfg 'cfg(freebsd10)' --check-cfg 'cfg(freebsd11)' --check-cfg 'cfg(freebsd12)' --check-cfg 'cfg(freebsd13)' --check-cfg 'cfg(freebsd14)' --check-cfg 'cfg(freebsd15)' --check-cfg 'cfg(gnu_file_offset_bits64)' --check-cfg 'cfg(gnu_time_bits64)' --check-cfg 'cfg(libc_deny_warnings)' --check-cfg 'cfg(linux_time_bits64)' --check-cfg 'cfg(musl_v1_2_3)' --check-cfg 'cfg(musl32_time64)' --check-cfg 'cfg(musl_redir_time64)' --check-cfg 'cfg(vxworks_lt_25_09)' --check-cfg 'cfg(libc_pauthtest)' --check-cfg 'cfg(target_os,values("switch","aix","ohos","hurd","rtems","visionos","nuttx","cygwin","qurt","qnx"))' --check-cfg 'cfg(target_env,values("illumos","wasi","aix","ohos","nto71_iosock"))' --check-cfg 'cfg(target_arch,values("loongarch64","mips32r6","mips64r6","csky"))'`
python3.14-biotite-1.7.1>      Running `/build/source/target/release/build/memoffset-79c46efb3ba21a25/build-script-build`
python3.14-biotite-1.7.1>      Running `rustc --crate-name proc_macro2 --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/proc-macro2-1.0.107/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="proc-macro"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "nightly", "proc-macro", "span-locations"))' -C metadata=6b49054ba469ee61 -C extra-filename=-4a62a3ccf1789728 --out-dir /build/source/target/release/deps -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern unicode_ident=/build/source/target/release/deps/libunicode_ident-24b354c2597e0ab2.rmeta --cap-lints allow --cfg wrap_proc_macro --cfg proc_macro_span_location --cfg proc_macro_span_file --check-cfg 'cfg(fuzzing)' --check-cfg 'cfg(no_is_available)' --check-cfg 'cfg(no_literal_byte_character)' --check-cfg 'cfg(no_literal_c_string)' --check-cfg 'cfg(no_source_text)' --check-cfg 'cfg(proc_macro_span)' --check-cfg 'cfg(proc_macro_span_file)' --check-cfg 'cfg(proc_macro_span_location)' --check-cfg 'cfg(procmacro2_backtrace)' --check-cfg 'cfg(procmacro2_build_probe)' --check-cfg 'cfg(procmacro2_nightly_testing)' --check-cfg 'cfg(procmacro2_semver_exempt)' --check-cfg 'cfg(randomize_layout)' --check-cfg 'cfg(span_locations)' --check-cfg 'cfg(super_unstable)' --check-cfg 'cfg(wrap_proc_macro)'`
python3.14-biotite-1.7.1>      Running `/build/source/target/release/build/target-lexicon-2ffe4a44fd514c8f/build-script-build`
python3.14-biotite-1.7.1>      Running `/build/source/target/release/build/num-traits-61bc2454960b47dc/build-script-build`
python3.14-biotite-1.7.1>      Running `/build/source/target/release/build/matrixmultiply-2e25874a8497635a/build-script-build`
python3.14-biotite-1.7.1>      Running `rustc --crate-name target_lexicon --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/target-lexicon-0.13.5/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no --warn=unexpected_cfgs --check-cfg 'cfg(feature, values("rust_1_40", "cargo-clippy"))' -C debug-assertions=off --cfg 'feature="default"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("arch_z80", "arch_zkasm", "default", "serde", "serde_support", "std"))' -C metadata=ac82e2696b02ebed -C extra-filename=-d28e530e8a41b8c6 --out-dir /build/source/target/release/deps -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --cap-lints allow --cfg 'feature="rust_1_40"'`
python3.14-biotite-1.7.1>      Running `rustc --crate-name memoffset --edition=2015 /build/biotite-1.7.1-vendor-vendor/source-registry-0/memoffset-0.9.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "unstable_const", "unstable_offset_of"))' -C metadata=f86acfe0a5154d02 -C extra-filename=-88412bbb96562e6e --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes --cfg tuple_ty --cfg allow_clippy --cfg maybe_uninit --cfg doctests --cfg raw_ref_macros --cfg stable_const --cfg stable_offset_of`
python3.14-biotite-1.7.1>      Running `rustc --crate-name matrixmultiply --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/matrixmultiply-0.3.11/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="cgemm"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("avx512", "cgemm", "constconf", "default", "num_cpus", "once_cell", "std", "thread-tree", "threading"))' -C metadata=39e8279a7a9becea -C extra-filename=-a9cdce1762729e6e --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern rawpointer=/build/source/target/x86_64-unknown-linux-gnu/release/deps/librawpointer-5013ff441e71e220.rmeta --cap-lints allow -Cforce-frame-pointers=yes --check-cfg 'cfg(has_avx512)'`
python3.14-biotite-1.7.1>      Running `rustc --crate-name num_traits --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/num-traits-0.2.19/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="i128"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "i128", "libm", "std"))' -C metadata=c5406f59402373b3 -C extra-filename=-14f9c1453d273c9f --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --cap-lints allow -Cforce-frame-pointers=yes --cfg has_total_cmp --check-cfg 'cfg(has_total_cmp)'`
python3.14-biotite-1.7.1>    Compiling pyo3-build-config v0.27.2
python3.14-biotite-1.7.1>      Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-build-config-0.27.2/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="extension-module"' --cfg 'feature="resolve-config"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "default", "extension-module", "generate-import-lib", "resolve-config"))' -C metadata=02c912f8fa3f2de1 -C extra-filename=-25c9889f6010bcb3 --out-dir /build/source/target/release/build/pyo3-build-config-25c9889f6010bcb3 -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern target_lexicon=/build/source/target/release/deps/libtarget_lexicon-d28e530e8a41b8c6.rlib --cap-lints allow`
python3.14-biotite-1.7.1>      Running `rustc --crate-name quote --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/quote-1.0.47/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="proc-macro"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "proc-macro"))' -C metadata=a36d2eb9ae0469ea -C extra-filename=-0de86e93dccf4fcc --out-dir /build/source/target/release/deps -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern proc_macro2=/build/source/target/release/deps/libproc_macro2-4a62a3ccf1789728.rmeta --cap-lints allow --check-cfg 'cfg(no_diagnostic_namespace)'`
python3.14-biotite-1.7.1>    Compiling syn v2.0.119
python3.14-biotite-1.7.1>      Running `rustc --crate-name syn --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/syn-2.0.119/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="clone-impls"' --cfg 'feature="default"' --cfg 'feature="derive"' --cfg 'feature="extra-traits"' --cfg 'feature="full"' --cfg 'feature="parsing"' --cfg 'feature="printing"' --cfg 'feature="proc-macro"' --cfg 'feature="visit-mut"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("clone-impls", "default", "derive", "extra-traits", "fold", "full", "parsing", "printing", "proc-macro", "test", "visit", "visit-mut"))' -C metadata=3b1da4d2353108c8 -C extra-filename=-419c2c0992ffe37c --out-dir /build/source/target/release/deps -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern proc_macro2=/build/source/target/release/deps/libproc_macro2-4a62a3ccf1789728.rmeta --extern quote=/build/source/target/release/deps/libquote-0de86e93dccf4fcc.rmeta --extern unicode_ident=/build/source/target/release/deps/libunicode_ident-24b354c2597e0ab2.rmeta --cap-lints allow`
python3.14-biotite-1.7.1>      Running `/build/source/target/release/build/pyo3-build-config-25c9889f6010bcb3/build-script-build`
python3.14-biotite-1.7.1>      Running `rustc --crate-name pyo3_build_config --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-build-config-0.27.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="extension-module"' --cfg 'feature="resolve-config"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "default", "extension-module", "generate-import-lib", "resolve-config"))' -C metadata=21db1d86bebef871 -C extra-filename=-494d95719802b2ea --out-dir /build/source/target/release/deps -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern target_lexicon=/build/source/target/release/deps/libtarget_lexicon-d28e530e8a41b8c6.rmeta --cap-lints allow`
python3.14-biotite-1.7.1>    Compiling num-complex v0.4.6
python3.14-biotite-1.7.1>    Compiling num-integer v0.1.47
python3.14-biotite-1.7.1>      Running `rustc --crate-name num_complex --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/num-complex-0.4.6/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("bytecheck", "bytemuck", "default", "libm", "rand", "rkyv", "serde", "std"))' -C metadata=28d6463cf93986c0 -C extra-filename=-9e07f84062acf10d --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern num_traits=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_traits-14f9c1453d273c9f.rmeta --cap-lints allow -Cforce-frame-pointers=yes`
python3.14-biotite-1.7.1>      Running `rustc --crate-name num_integer --edition=2018 /build/biotite-1.7.1-vendor-vendor/source-registry-0/num-integer-0.1.47/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "i128", "std"))' -C metadata=110b2c8a0118aa3d -C extra-filename=-f46f7d1e53d8067e --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern num_traits=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_traits-14f9c1453d273c9f.rmeta --cap-lints allow -Cforce-frame-pointers=yes`
python3.14-biotite-1.7.1>    Compiling pyo3-ffi v0.27.2
python3.14-biotite-1.7.1>    Compiling pyo3-macros-backend v0.27.2
python3.14-biotite-1.7.1>    Compiling pyo3 v0.27.2
python3.14-biotite-1.7.1>    Compiling numpy v0.27.1
python3.14-biotite-1.7.1>      Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-ffi-0.27.2/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="extension-module"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "default", "extension-module", "generate-import-lib"))' -C metadata=642d46dfef992436 -C extra-filename=-0bfa3861444bd980 --out-dir /build/source/target/release/build/pyo3-ffi-0bfa3861444bd980 -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern pyo3_build_config=/build/source/target/release/deps/libpyo3_build_config-494d95719802b2ea.rlib --cap-lints allow`
python3.14-biotite-1.7.1>      Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-macros-backend-0.27.2/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("experimental-async", "experimental-inspect"))' -C metadata=41ff6fe5da9c5c73 -C extra-filename=-16dadac3361ab4f5 --out-dir /build/source/target/release/build/pyo3-macros-backend-16dadac3361ab4f5 -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern pyo3_build_config=/build/source/target/release/deps/libpyo3_build_config-494d95719802b2ea.rlib --cap-lints allow`
python3.14-biotite-1.7.1>      Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-0.27.2/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' -C debug-assertions=off --cfg 'feature="default"' --cfg 'feature="extension-module"' --cfg 'feature="indoc"' --cfg 'feature="macros"' --cfg 'feature="pyo3-macros"' --cfg 'feature="unindent"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "anyhow", "arc_lock", "auto-initialize", "bigdecimal", "bytes", "chrono", "chrono-local", "chrono-tz", "default", "either", "experimental-async", "experimental-inspect", "extension-module", "eyre", "full", "generate-import-lib", "hashbrown", "indexmap", "indoc", "inventory", "jiff-02", "lock_api", "macros", "multiple-pymethods", "nightly", "num-bigint", "num-complex", "num-rational", "ordered-float", "parking_lot", "py-clone", "pyo3-macros", "rust_decimal", "serde", "smallvec", "time", "unindent", "uuid"))' -C metadata=b22fd0aaeb1bf675 -C extra-filename=-105684b7d11f910e --out-dir /build/source/target/release/build/pyo3-105684b7d11f910e -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern pyo3_build_config=/build/source/target/release/deps/libpyo3_build_config-494d95719802b2ea.rlib --cap-lints allow`
python3.14-biotite-1.7.1>      Running `rustc --crate-name build_script_build --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/numpy-0.27.1/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no '--allow=clippy::needless-lifetimes' --deny=elided-lifetimes-in-paths -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("half", "nalgebra"))' -C metadata=5cc23885212904b8 -C extra-filename=-8cffdc948ff3e233 --out-dir /build/source/target/release/build/numpy-8cffdc948ff3e233 -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern pyo3_build_config=/build/source/target/release/deps/libpyo3_build_config-494d95719802b2ea.rlib --cap-lints allow`
python3.14-biotite-1.7.1>    Compiling ndarray v0.17.2
python3.14-biotite-1.7.1>      Running `rustc --crate-name ndarray --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/ndarray-0.17.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("approx", "blas", "default", "matrixmultiply-threading", "portable-atomic-critical-section", "rayon", "serde", "std"))' -C metadata=07d838f672d94a9a -C extra-filename=-10d2c16c579a185c --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern matrixmultiply=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libmatrixmultiply-a9cdce1762729e6e.rmeta --extern num_complex=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_complex-9e07f84062acf10d.rmeta --extern num_integer=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_integer-f46f7d1e53d8067e.rmeta --extern num_traits=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_traits-14f9c1453d273c9f.rmeta --extern rawpointer=/build/source/target/x86_64-unknown-linux-gnu/release/deps/librawpointer-5013ff441e71e220.rmeta --cap-lints allow -Cforce-frame-pointers=yes`
python3.14-biotite-1.7.1>      Running `/build/source/target/release/build/pyo3-macros-backend-16dadac3361ab4f5/build-script-build`
python3.14-biotite-1.7.1>      Running `/build/source/target/release/build/numpy-8cffdc948ff3e233/build-script-build`
python3.14-biotite-1.7.1>      Running `/build/source/target/release/build/pyo3-ffi-0bfa3861444bd980/build-script-build`
python3.14-biotite-1.7.1>      Running `/build/source/target/release/build/pyo3-105684b7d11f910e/build-script-build`
python3.14-biotite-1.7.1>      Running `rustc --crate-name pyo3_ffi --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-ffi-0.27.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' --cfg 'feature="default"' --cfg 'feature="extension-module"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "default", "extension-module", "generate-import-lib"))' -C metadata=639d0be0407b0b93 -C extra-filename=-97f75393788077b9 --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern libc=/build/source/target/x86_64-unknown-linux-gnu/release/deps/liblibc-2e4dae809765e2a7.rmeta --cap-lints allow -Cforce-frame-pointers=yes --cfg Py_3_7 --cfg Py_3_8 --cfg Py_3_9 --cfg Py_3_10 --cfg Py_3_11 --cfg Py_3_12 --cfg Py_3_13 --cfg Py_3_14 --cfg return_position_impl_trait_in_traits --cfg c_str_lit --cfg diagnostic_namespace --cfg io_error_more --cfg mut_ref_in_const_fn --cfg fn_ptr_eq --cfg from_bytes_with_nul_error --check-cfg 'cfg(Py_LIMITED_API)' --check-cfg 'cfg(Py_GIL_DISABLED)' --check-cfg 'cfg(PyPy)' --check-cfg 'cfg(GraalPy)' --check-cfg 'cfg(py_sys_config, values("Py_DEBUG", "Py_REF_DEBUG", "Py_TRACE_REFS", "COUNT_ALLOCS"))' --check-cfg 'cfg(pyo3_disable_reference_pool)' --check-cfg 'cfg(pyo3_leak_on_drop_without_reference_pool)' --check-cfg 'cfg(Py_3_7)' --check-cfg 'cfg(Py_3_8)' --check-cfg 'cfg(Py_3_9)' --check-cfg 'cfg(Py_3_10)' --check-cfg 'cfg(Py_3_11)' --check-cfg 'cfg(Py_3_12)' --check-cfg 'cfg(Py_3_13)' --check-cfg 'cfg(Py_3_14)' --check-cfg 'cfg(Py_3_15)' --check-cfg 'cfg(return_position_impl_trait_in_traits)' --check-cfg 'cfg(c_str_lit)' --check-cfg 'cfg(diagnostic_namespace)' --check-cfg 'cfg(io_error_more)' --check-cfg 'cfg(mut_ref_in_const_fn)' --check-cfg 'cfg(fn_ptr_eq)' --check-cfg 'cfg(from_bytes_with_nul_error)'`
python3.14-biotite-1.7.1>      Running `rustc --crate-name pyo3_macros_backend --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-macros-backend-0.27.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("experimental-async", "experimental-inspect"))' -C metadata=81c26922f5560ed7 -C extra-filename=-d442d7f223cba3ae --out-dir /build/source/target/release/deps -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern heck=/build/source/target/release/deps/libheck-2b93fc40042d2031.rmeta --extern proc_macro2=/build/source/target/release/deps/libproc_macro2-4a62a3ccf1789728.rmeta --extern pyo3_build_config=/build/source/target/release/deps/libpyo3_build_config-494d95719802b2ea.rmeta --extern quote=/build/source/target/release/deps/libquote-0de86e93dccf4fcc.rmeta --extern syn=/build/source/target/release/deps/libsyn-419c2c0992ffe37c.rmeta --cap-lints allow --cfg return_position_impl_trait_in_traits --cfg c_str_lit --cfg diagnostic_namespace --cfg io_error_more --cfg mut_ref_in_const_fn --cfg fn_ptr_eq --cfg from_bytes_with_nul_error --check-cfg 'cfg(Py_LIMITED_API)' --check-cfg 'cfg(Py_GIL_DISABLED)' --check-cfg 'cfg(PyPy)' --check-cfg 'cfg(GraalPy)' --check-cfg 'cfg(py_sys_config, values("Py_DEBUG", "Py_REF_DEBUG", "Py_TRACE_REFS", "COUNT_ALLOCS"))' --check-cfg 'cfg(pyo3_disable_reference_pool)' --check-cfg 'cfg(pyo3_leak_on_drop_without_reference_pool)' --check-cfg 'cfg(Py_3_7)' --check-cfg 'cfg(Py_3_8)' --check-cfg 'cfg(Py_3_9)' --check-cfg 'cfg(Py_3_10)' --check-cfg 'cfg(Py_3_11)' --check-cfg 'cfg(Py_3_12)' --check-cfg 'cfg(Py_3_13)' --check-cfg 'cfg(Py_3_14)' --check-cfg 'cfg(Py_3_15)' --check-cfg 'cfg(return_position_impl_trait_in_traits)' --check-cfg 'cfg(c_str_lit)' --check-cfg 'cfg(diagnostic_namespace)' --check-cfg 'cfg(io_error_more)' --check-cfg 'cfg(mut_ref_in_const_fn)' --check-cfg 'cfg(fn_ptr_eq)' --check-cfg 'cfg(from_bytes_with_nul_error)'`
python3.14-biotite-1.7.1>    Compiling pyo3-macros v0.27.2
python3.14-biotite-1.7.1>      Running `rustc --crate-name pyo3_macros --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-macros-0.27.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type proc-macro --emit=dep-info,link -C prefer-dynamic -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' -C debug-assertions=off --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("experimental-async", "experimental-inspect", "multiple-pymethods"))' -C metadata=22c98453d41d0bcd -C extra-filename=-1b9dc779c9b5c236 --out-dir /build/source/target/release/deps -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/release/deps --extern proc_macro2=/build/source/target/release/deps/libproc_macro2-4a62a3ccf1789728.rlib --extern pyo3_macros_backend=/build/source/target/release/deps/libpyo3_macros_backend-d442d7f223cba3ae.rlib --extern quote=/build/source/target/release/deps/libquote-0de86e93dccf4fcc.rlib --extern syn=/build/source/target/release/deps/libsyn-419c2c0992ffe37c.rlib --extern proc_macro --cap-lints allow`
python3.14-biotite-1.7.1>      Running `rustc --crate-name pyo3 --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/pyo3-0.27.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' --cfg 'feature="default"' --cfg 'feature="extension-module"' --cfg 'feature="indoc"' --cfg 'feature="macros"' --cfg 'feature="pyo3-macros"' --cfg 'feature="unindent"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("abi3", "abi3-py310", "abi3-py311", "abi3-py312", "abi3-py313", "abi3-py314", "abi3-py37", "abi3-py38", "abi3-py39", "anyhow", "arc_lock", "auto-initialize", "bigdecimal", "bytes", "chrono", "chrono-local", "chrono-tz", "default", "either", "experimental-async", "experimental-inspect", "extension-module", "eyre", "full", "generate-import-lib", "hashbrown", "indexmap", "indoc", "inventory", "jiff-02", "lock_api", "macros", "multiple-pymethods", "nightly", "num-bigint", "num-complex", "num-rational", "ordered-float", "parking_lot", "py-clone", "pyo3-macros", "rust_decimal", "serde", "smallvec", "time", "unindent", "uuid"))' -C metadata=13953ada9c66130b -C extra-filename=-12c139fc4f8acd0e --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern indoc=/build/source/target/release/deps/libindoc-13e7c5fbcec73ab6.so --extern libc=/build/source/target/x86_64-unknown-linux-gnu/release/deps/liblibc-2e4dae809765e2a7.rmeta --extern memoffset=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libmemoffset-88412bbb96562e6e.rmeta --extern once_cell=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libonce_cell-cda02b276aeda687.rmeta --extern pyo3_ffi=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libpyo3_ffi-97f75393788077b9.rmeta --extern pyo3_macros=/build/source/target/release/deps/libpyo3_macros-1b9dc779c9b5c236.so --extern unindent=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libunindent-bc062914628acc6a.rmeta --cap-lints allow -Cforce-frame-pointers=yes --cfg Py_3_7 --cfg Py_3_8 --cfg Py_3_9 --cfg Py_3_10 --cfg Py_3_11 --cfg Py_3_12 --cfg Py_3_13 --cfg Py_3_14 --cfg return_position_impl_trait_in_traits --cfg c_str_lit --cfg diagnostic_namespace --cfg io_error_more --cfg mut_ref_in_const_fn --cfg fn_ptr_eq --cfg from_bytes_with_nul_error --check-cfg 'cfg(Py_LIMITED_API)' --check-cfg 'cfg(Py_GIL_DISABLED)' --check-cfg 'cfg(PyPy)' --check-cfg 'cfg(GraalPy)' --check-cfg 'cfg(py_sys_config, values("Py_DEBUG", "Py_REF_DEBUG", "Py_TRACE_REFS", "COUNT_ALLOCS"))' --check-cfg 'cfg(pyo3_disable_reference_pool)' --check-cfg 'cfg(pyo3_leak_on_drop_without_reference_pool)' --check-cfg 'cfg(Py_3_7)' --check-cfg 'cfg(Py_3_8)' --check-cfg 'cfg(Py_3_9)' --check-cfg 'cfg(Py_3_10)' --check-cfg 'cfg(Py_3_11)' --check-cfg 'cfg(Py_3_12)' --check-cfg 'cfg(Py_3_13)' --check-cfg 'cfg(Py_3_14)' --check-cfg 'cfg(Py_3_15)' --check-cfg 'cfg(return_position_impl_trait_in_traits)' --check-cfg 'cfg(c_str_lit)' --check-cfg 'cfg(diagnostic_namespace)' --check-cfg 'cfg(io_error_more)' --check-cfg 'cfg(mut_ref_in_const_fn)' --check-cfg 'cfg(fn_ptr_eq)' --check-cfg 'cfg(from_bytes_with_nul_error)'`
python3.14-biotite-1.7.1>      Running `rustc --crate-name numpy --edition=2021 /build/biotite-1.7.1-vendor-vendor/source-registry-0/numpy-0.27.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no '--allow=clippy::needless-lifetimes' --deny=elided-lifetimes-in-paths --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("half", "nalgebra"))' -C metadata=f2a6998ad9c639a9 -C extra-filename=-237ca85cfc32a3ef --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern libc=/build/source/target/x86_64-unknown-linux-gnu/release/deps/liblibc-2e4dae809765e2a7.rmeta --extern ndarray=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libndarray-10d2c16c579a185c.rmeta --extern num_complex=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_complex-9e07f84062acf10d.rmeta --extern num_integer=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_integer-f46f7d1e53d8067e.rmeta --extern num_traits=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_traits-14f9c1453d273c9f.rmeta --extern pyo3=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libpyo3-12c139fc4f8acd0e.rmeta --extern rustc_hash=/build/source/target/x86_64-unknown-linux-gnu/release/deps/librustc_hash-14db18c40b41c22e.rmeta --cap-lints allow -Cforce-frame-pointers=yes --cfg Py_3_7 --cfg Py_3_8 --cfg Py_3_9 --cfg Py_3_10 --cfg Py_3_11 --cfg Py_3_12 --cfg Py_3_13 --cfg Py_3_14 --check-cfg 'cfg(Py_LIMITED_API)' --check-cfg 'cfg(Py_GIL_DISABLED)' --check-cfg 'cfg(PyPy)' --check-cfg 'cfg(GraalPy)' --check-cfg 'cfg(py_sys_config, values("Py_DEBUG", "Py_REF_DEBUG", "Py_TRACE_REFS", "COUNT_ALLOCS"))' --check-cfg 'cfg(pyo3_disable_reference_pool)' --check-cfg 'cfg(pyo3_leak_on_drop_without_reference_pool)' --check-cfg 'cfg(Py_3_7)' --check-cfg 'cfg(Py_3_8)' --check-cfg 'cfg(Py_3_9)' --check-cfg 'cfg(Py_3_10)' --check-cfg 'cfg(Py_3_11)' --check-cfg 'cfg(Py_3_12)' --check-cfg 'cfg(Py_3_13)' --check-cfg 'cfg(Py_3_14)' --check-cfg 'cfg(Py_3_15)'`
python3.14-biotite-1.7.1>    Compiling biotite_rust v0.0.0 (/build/source)
python3.14-biotite-1.7.1>      Running `rustc --crate-name rust --edition=2018 src/rust/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type cdylib --emit=dep-info,link -C opt-level=3 -C embed-bitcode=no --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=fc71abe7e2dc502d --out-dir /build/source/target/x86_64-unknown-linux-gnu/release/deps --target x86_64-unknown-linux-gnu -C linker=/nix/store/l5qkpzsr4gxvksh45b3nhxbkyr5cviar-gcc-wrapper-15.3.0/bin/cc -C strip=debuginfo -L dependency=/build/source/target/x86_64-unknown-linux-gnu/release/deps -L dependency=/build/source/target/release/deps --extern itertools=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libitertools-4ce561eacd3e7b46.rlib --extern ndarray=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libndarray-10d2c16c579a185c.rlib --extern num_traits=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnum_traits-14f9c1453d273c9f.rlib --extern numpy=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libnumpy-237ca85cfc32a3ef.rlib --extern pyo3=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libpyo3-12c139fc4f8acd0e.rlib --extern smallvec=/build/source/target/x86_64-unknown-linux-gnu/release/deps/libsmallvec-e94efb49232f0947.rlib -Cforce-frame-pointers=yes`
python3.14-biotite-1.7.1>     Finished `release` profile [optimized] target(s) in 14.43s
python3.14-biotite-1.7.1> Copying rust artifact from target/x86_64-unknown-linux-gnu/release/librust.so to build/lib.linux-x86_64-cpython-314/biotite/rust.cpython-314-x86_64-linux-gnu.so
python3.14-biotite-1.7.1> installing to build/bdist.linux-x86_64/wheel
python3.14-biotite-1.7.1> running install
python3.14-biotite-1.7.1> running install_lib
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/copyable.py -> build/bdist.linux-x86_64/wheel/./biotite
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/file.py -> build/bdist.linux-x86_64/wheel/./biotite
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/setup_ccd.py -> build/bdist.linux-x86_64/wheel/./biotite
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/typing.py -> build/bdist.linux-x86_64/wheel/./biotite
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/visualize.py -> build/bdist.linux-x86_64/wheel/./biotite
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/version.py -> build/bdist.linux-x86_64/wheel/./biotite
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/interface
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/interface/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/interface
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/interface/version.py -> build/bdist.linux-x86_64/wheel/./biotite/interface
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/interface/warning.py -> build/bdist.linux-x86_64/wheel/./biotite/interface
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/interface/openmm
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/interface/openmm/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/openmm
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/interface/openmm/state.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/openmm
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/interface/openmm/system.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/openmm
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/interface/pymol
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/cgo.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/display.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/object.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/shapes.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/interface/pymol/startup.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/pymol
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/interface/rdkit
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/interface/rdkit/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/rdkit
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/interface/rdkit/mol.py -> build/bdist.linux-x86_64/wheel/./biotite/interface/rdkit
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/sequence
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/alphabet.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/annotation.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/codon.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/profile.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/search.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/seqtypes.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/sequence.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/alignment.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/buckets.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/cigar.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/statistics.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/banded.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/banded.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/banded.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmeralphabet.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmeralphabet.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmeralphabet.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmersimilarity.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmersimilarity.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmersimilarity.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmertable.cpp -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmertable.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmertable.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localgapped.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localgapped.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localgapped.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localungapped.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localungapped.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localungapped.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/multiple.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/multiple.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/multiple.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/pairwise.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/pairwise.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/pairwise.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/permutation.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/permutation.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/permutation.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/primes.txt -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/selector.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/selector.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/selector.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/tracetable.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/tracetable.pxd -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/tracetable.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/3Di.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM100.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM30.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM35.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM40.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM45.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM50.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM50_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM50_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM50_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM55.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM60.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM62.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM62_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM62_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM62_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM65.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM70.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM75.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM80.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM85.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUM90.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/BLOSUMN.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM49_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM57_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM57_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM61_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM66_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/CorBLOSUM67_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/DAYHOFF.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/GONNET.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/IDENTITY.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/MATCH.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/NUC.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM10.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM100.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM110.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM120.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM130.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM140.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM150.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM160.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM170.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM180.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM190.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM20.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM200.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM210.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM220.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM230.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM240.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM250.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM260.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM270.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM280.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM290.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM30.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM300.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM310.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM320.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM330.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM340.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM350.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM360.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM370.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM380.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM390.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM40.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM400.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM410.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM420.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM430.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM440.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM450.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM460.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM470.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM480.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM490.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM50.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM500.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM60.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM70.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM80.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PAM90.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PB.license -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/PB.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM52_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM59_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM59_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM64_5.0.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM69_13p.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/matrix_data/RBLOSUM69_14.3.mat -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align/matrix_data
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/banded.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmeralphabet.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmersimilarity.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/kmertable.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localgapped.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/localungapped.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/multiple.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/pairwise.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/permutation.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/selector.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/align/tracetable.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/align
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/sequence/graphics
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/alignment.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/colorschemes.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/dendrogram.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/features.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/logo.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/plasmid.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/3di_flower.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/autumn.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/blossom.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/clustalx_dna.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/clustalx_protein.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/flower.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_buried.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_hydrophobicity.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_prop_helix.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_prop_strand.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_prop_turn.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_taylor.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/jalview_zappo.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/ocean.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/pb_flower.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/rainbow_dna.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/rainbow_protein.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/spring.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/sunset.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/graphics/color_schemes/wither.json -> build/bdist.linux-x86_64/wheel/./biotite/sequence/graphics/color_schemes
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/sequence/io
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/general.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/sequence/io/clustal
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/clustal
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/clustal
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/clustal/file.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/clustal
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/sequence/io/fasta
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fasta
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fasta
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fasta/file.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fasta
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/sequence/io/fastq
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fastq
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fastq
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/fastq/file.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/fastq
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/sequence/io/genbank
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/genbank
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank/annotation.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/genbank
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank/file.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/genbank
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank/metadata.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/genbank
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/genbank/sequence.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/genbank
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/sequence/io/gff
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/gff
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/gff
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/io/gff/file.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/io/gff
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/sequence/phylo
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/nj.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/nj.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/nj.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/tree.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/tree.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/tree.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/upgma.c -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/upgma.pyi -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/upgma.pyx -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/nj.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/tree.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/phylo/upgma.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite/sequence/phylo
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/sequence/codon_tables.txt -> build/bdist.linux-x86_64/wheel/./biotite/sequence
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/superimpose.py -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/atoms.py -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/basepairs.py -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/bonds.py -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/box.py -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/celllist.py -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/chains.py -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/charges.py -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/compare.py -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/connect.py -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/density.py -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/dotbracket.py -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/error.py -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/filter.py -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/geometry.py -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/hbond.py -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/integrity.py -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/mechanics.py -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/molecules.py -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/pseudoknots.py -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/rdf.py -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/repair.py -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/residues.py -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/rings.py -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/sasa.py -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/segments.py -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/sequence.py -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/sse.py -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/tm.py -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/transform.py -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/util.py -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/structure/alphabet
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/encoder.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/i3d.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/layers.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/pb.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/unkerasify.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/encoder_weights_3di.kerasify -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/alphabet/pb.license -> build/bdist.linux-x86_64/wheel/./biotite/structure/alphabet
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/structure/graphics
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/graphics/atoms.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/graphics
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/graphics/rna.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/graphics
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/graphics/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/graphics
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/structure/info
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/atoms.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/bonds.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/ccd.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/groups.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/masses.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/misc.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/radii.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/standardize.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/info
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/info/atom_masses.json -> build/bdist.linux-x86_64/wheel/./biotite/structure/info
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/structure/io
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/general.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/trajfile.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/util.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/structure/io/dcd
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/dcd/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/dcd
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/dcd/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/dcd
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/structure/io/gro
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/gro/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/gro
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/gro/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/gro
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/structure/io/mol
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/ctab.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/header.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/mol.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/mol/sdf.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/mol
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/structure/io/netcdf
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/netcdf/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/netcdf
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/netcdf/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/netcdf
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/structure/io/pdb
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdb
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdb
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdb/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdb
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/structure/io/pdbqt
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbqt
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbqt
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbqt/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbqt
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/structure/io/pdbx
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/bcif.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/cif.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/component.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/compress.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/convert.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/pdbx/encoding.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/pdbx
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/structure/io/trr
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/trr/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/trr
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/trr/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/trr
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/structure/io/xtc
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/xtc/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/xtc
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/io/xtc/file.py -> build/bdist.linux-x86_64/wheel/./biotite/structure/io/xtc
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/atoms.pyi -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/bonds.pyi -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/celllist.pyi -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/spacegroups.json -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/structure/spacegroups.license -> build/bdist.linux-x86_64/wheel/./biotite/structure
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/application
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/application.py -> build/bdist.linux-x86_64/wheel/./biotite/application
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/localapp.py -> build/bdist.linux-x86_64/wheel/./biotite/application
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/msaapp.py -> build/bdist.linux-x86_64/wheel/./biotite/application
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/util.py -> build/bdist.linux-x86_64/wheel/./biotite/application
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/webapp.py -> build/bdist.linux-x86_64/wheel/./biotite/application
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/application/autodock
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/autodock/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/autodock
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/autodock/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/autodock
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/application/blast
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/blast/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/blast
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/blast/alignment.py -> build/bdist.linux-x86_64/wheel/./biotite/application/blast
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/blast/webapp.py -> build/bdist.linux-x86_64/wheel/./biotite/application/blast
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/application/clustalo
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/clustalo/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/clustalo
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/clustalo/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/clustalo
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/application/dssp
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/dssp/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/dssp
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/dssp/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/dssp
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/application/mafft
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/mafft/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/mafft
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/mafft/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/mafft
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/application/muscle
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/muscle/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/muscle
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/muscle/app3.py -> build/bdist.linux-x86_64/wheel/./biotite/application/muscle
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/muscle/app5.py -> build/bdist.linux-x86_64/wheel/./biotite/application/muscle
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/application/sra
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/sra/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/sra
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/sra/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/sra
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/application/tantan
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/tantan/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/tantan
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/tantan/app.py -> build/bdist.linux-x86_64/wheel/./biotite/application/tantan
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/application/viennarna
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/viennarna/rnaalifold.py -> build/bdist.linux-x86_64/wheel/./biotite/application/viennarna
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/viennarna/rnafold.py -> build/bdist.linux-x86_64/wheel/./biotite/application/viennarna
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/viennarna/rnaplot.py -> build/bdist.linux-x86_64/wheel/./biotite/application/viennarna
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/viennarna/util.py -> build/bdist.linux-x86_64/wheel/./biotite/application/viennarna
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/application/viennarna/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/application/viennarna
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/database
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/error.py -> build/bdist.linux-x86_64/wheel/./biotite/database
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/database/pubchem
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/pubchem/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database/pubchem
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/pubchem/download.py -> build/bdist.linux-x86_64/wheel/./biotite/database/pubchem
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/pubchem/error.py -> build/bdist.linux-x86_64/wheel/./biotite/database/pubchem
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/pubchem/query.py -> build/bdist.linux-x86_64/wheel/./biotite/database/pubchem
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/pubchem/throttle.py -> build/bdist.linux-x86_64/wheel/./biotite/database/pubchem
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/database/rcsb
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/rcsb/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database/rcsb
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/rcsb/download.py -> build/bdist.linux-x86_64/wheel/./biotite/database/rcsb
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/rcsb/query.py -> build/bdist.linux-x86_64/wheel/./biotite/database/rcsb
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/database/uniprot
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/uniprot/check.py -> build/bdist.linux-x86_64/wheel/./biotite/database/uniprot
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/uniprot/download.py -> build/bdist.linux-x86_64/wheel/./biotite/database/uniprot
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/uniprot/query.py -> build/bdist.linux-x86_64/wheel/./biotite/database/uniprot
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/uniprot/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database/uniprot
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/database/afdb
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/afdb/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database/afdb
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/afdb/download.py -> build/bdist.linux-x86_64/wheel/./biotite/database/afdb
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite/database/entrez
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/__init__.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/check.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/dbnames.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/download.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/key.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/database/entrez/query.py -> build/bdist.linux-x86_64/wheel/./biotite/database/entrez
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/py.typed -> build/bdist.linux-x86_64/wheel/./biotite
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/biotite/rust.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./biotite
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/rust
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/rust/lib.rs -> build/bdist.linux-x86_64/wheel/./rust
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/rust/util.rs -> build/bdist.linux-x86_64/wheel/./rust
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/rust/sequence
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/rust/sequence/codec.rs -> build/bdist.linux-x86_64/wheel/./rust/sequence
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/rust/sequence/mod.rs -> build/bdist.linux-x86_64/wheel/./rust/sequence
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/rust/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/rust/structure/bonds.rs -> build/bdist.linux-x86_64/wheel/./rust/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/rust/structure/celllist.rs -> build/bdist.linux-x86_64/wheel/./rust/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/rust/structure/charges.rs -> build/bdist.linux-x86_64/wheel/./rust/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/rust/structure/connect.rs -> build/bdist.linux-x86_64/wheel/./rust/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/rust/structure/mod.rs -> build/bdist.linux-x86_64/wheel/./rust/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/rust/structure/sasa.rs -> build/bdist.linux-x86_64/wheel/./rust/structure
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/rust/structure/util.rs -> build/bdist.linux-x86_64/wheel/./rust/structure
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/rust/structure/io
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/rust/structure/io/mod.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/rust/structure/io/pdb
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb/file.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io/pdb
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb/hybrid36.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io/pdb
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/rust/structure/io/pdb/mod.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io/pdb
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/rust/structure/io/pdbx
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/rust/structure/io/pdbx/encoding.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io/pdbx
python3.14-biotite-1.7.1> copying build/lib.linux-x86_64-cpython-314/rust/structure/io/pdbx/mod.rs -> build/bdist.linux-x86_64/wheel/./rust/structure/io/pdbx
python3.14-biotite-1.7.1> running install_egg_info
python3.14-biotite-1.7.1> Copying src/biotite.egg-info to build/bdist.linux-x86_64/wheel/./biotite-1.7.1-py3.14.egg-info
python3.14-biotite-1.7.1> running install_scripts
python3.14-biotite-1.7.1> creating build/bdist.linux-x86_64/wheel/biotite-1.7.1.dist-info/WHEEL
python3.14-biotite-1.7.1> creating '/build/source/dist/.tmp-sr58z646/biotite-1.7.1-cp314-cp314-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
python3.14-biotite-1.7.1> adding 'biotite/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/copyable.py'
python3.14-biotite-1.7.1> adding 'biotite/file.py'
python3.14-biotite-1.7.1> adding 'biotite/py.typed'
python3.14-biotite-1.7.1> adding 'biotite/rust.cpython-314-x86_64-linux-gnu.so'
python3.14-biotite-1.7.1> adding 'biotite/setup_ccd.py'
python3.14-biotite-1.7.1> adding 'biotite/typing.py'
python3.14-biotite-1.7.1> adding 'biotite/version.py'
python3.14-biotite-1.7.1> adding 'biotite/visualize.py'
python3.14-biotite-1.7.1> adding 'biotite/application/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/application/application.py'
python3.14-biotite-1.7.1> adding 'biotite/application/localapp.py'
python3.14-biotite-1.7.1> adding 'biotite/application/msaapp.py'
python3.14-biotite-1.7.1> adding 'biotite/application/util.py'
python3.14-biotite-1.7.1> adding 'biotite/application/webapp.py'
python3.14-biotite-1.7.1> adding 'biotite/application/autodock/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/application/autodock/app.py'
python3.14-biotite-1.7.1> adding 'biotite/application/blast/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/application/blast/alignment.py'
python3.14-biotite-1.7.1> adding 'biotite/application/blast/webapp.py'
python3.14-biotite-1.7.1> adding 'biotite/application/clustalo/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/application/clustalo/app.py'
python3.14-biotite-1.7.1> adding 'biotite/application/dssp/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/application/dssp/app.py'
python3.14-biotite-1.7.1> adding 'biotite/application/mafft/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/application/mafft/app.py'
python3.14-biotite-1.7.1> adding 'biotite/application/muscle/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/application/muscle/app3.py'
python3.14-biotite-1.7.1> adding 'biotite/application/muscle/app5.py'
python3.14-biotite-1.7.1> adding 'biotite/application/sra/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/application/sra/app.py'
python3.14-biotite-1.7.1> adding 'biotite/application/tantan/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/application/tantan/app.py'
python3.14-biotite-1.7.1> adding 'biotite/application/viennarna/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/application/viennarna/rnaalifold.py'
python3.14-biotite-1.7.1> adding 'biotite/application/viennarna/rnafold.py'
python3.14-biotite-1.7.1> adding 'biotite/application/viennarna/rnaplot.py'
python3.14-biotite-1.7.1> adding 'biotite/application/viennarna/util.py'
python3.14-biotite-1.7.1> adding 'biotite/database/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/database/error.py'
python3.14-biotite-1.7.1> adding 'biotite/database/afdb/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/database/afdb/download.py'
python3.14-biotite-1.7.1> adding 'biotite/database/entrez/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/database/entrez/check.py'
python3.14-biotite-1.7.1> adding 'biotite/database/entrez/dbnames.py'
python3.14-biotite-1.7.1> adding 'biotite/database/entrez/download.py'
python3.14-biotite-1.7.1> adding 'biotite/database/entrez/key.py'
python3.14-biotite-1.7.1> adding 'biotite/database/entrez/query.py'
python3.14-biotite-1.7.1> adding 'biotite/database/pubchem/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/database/pubchem/download.py'
python3.14-biotite-1.7.1> adding 'biotite/database/pubchem/error.py'
python3.14-biotite-1.7.1> adding 'biotite/database/pubchem/query.py'
python3.14-biotite-1.7.1> adding 'biotite/database/pubchem/throttle.py'
python3.14-biotite-1.7.1> adding 'biotite/database/rcsb/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/database/rcsb/download.py'
python3.14-biotite-1.7.1> adding 'biotite/database/rcsb/query.py'
python3.14-biotite-1.7.1> adding 'biotite/database/uniprot/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/database/uniprot/check.py'
python3.14-biotite-1.7.1> adding 'biotite/database/uniprot/download.py'
python3.14-biotite-1.7.1> adding 'biotite/database/uniprot/query.py'
python3.14-biotite-1.7.1> adding 'biotite/interface/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/interface/version.py'
python3.14-biotite-1.7.1> adding 'biotite/interface/warning.py'
python3.14-biotite-1.7.1> adding 'biotite/interface/openmm/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/interface/openmm/state.py'
python3.14-biotite-1.7.1> adding 'biotite/interface/openmm/system.py'
python3.14-biotite-1.7.1> adding 'biotite/interface/pymol/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/interface/pymol/cgo.py'
python3.14-biotite-1.7.1> adding 'biotite/interface/pymol/convert.py'
python3.14-biotite-1.7.1> adding 'biotite/interface/pymol/display.py'
python3.14-biotite-1.7.1> adding 'biotite/interface/pymol/object.py'
python3.14-biotite-1.7.1> adding 'biotite/interface/pymol/shapes.py'
python3.14-biotite-1.7.1> adding 'biotite/interface/pymol/startup.py'
python3.14-biotite-1.7.1> adding 'biotite/interface/rdkit/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/interface/rdkit/mol.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/alphabet.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/annotation.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/codon.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/codon_tables.txt'
python3.14-biotite-1.7.1> adding 'biotite/sequence/profile.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/search.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/seqtypes.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/sequence.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/alignment.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/banded.c'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/banded.cpython-314-x86_64-linux-gnu.so'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/banded.pyi'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/banded.pyx'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/buckets.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/cigar.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/kmeralphabet.c'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/kmeralphabet.cpython-314-x86_64-linux-gnu.so'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/kmeralphabet.pyi'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/kmeralphabet.pyx'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/kmersimilarity.c'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/kmersimilarity.cpython-314-x86_64-linux-gnu.so'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/kmersimilarity.pyi'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/kmersimilarity.pyx'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/kmertable.cpp'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/kmertable.cpython-314-x86_64-linux-gnu.so'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/kmertable.pyi'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/kmertable.pyx'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/localgapped.c'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/localgapped.cpython-314-x86_64-linux-gnu.so'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/localgapped.pyi'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/localgapped.pyx'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/localungapped.c'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/localungapped.cpython-314-x86_64-linux-gnu.so'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/localungapped.pyi'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/localungapped.pyx'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/multiple.c'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/multiple.cpython-314-x86_64-linux-gnu.so'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/multiple.pyi'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/multiple.pyx'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/pairwise.c'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/pairwise.cpython-314-x86_64-linux-gnu.so'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/pairwise.pyi'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/pairwise.pyx'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/permutation.c'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/permutation.cpython-314-x86_64-linux-gnu.so'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/permutation.pyi'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/permutation.pyx'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/primes.txt'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/selector.c'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/selector.cpython-314-x86_64-linux-gnu.so'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/selector.pyi'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/selector.pyx'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/statistics.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/tracetable.c'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/tracetable.cpython-314-x86_64-linux-gnu.so'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/tracetable.pxd'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/tracetable.pyx'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/3Di.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM100.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM30.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM35.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM40.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM45.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM50.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM50_13p.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM50_14.3.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM50_5.0.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM55.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM60.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM62.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM62_13p.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM62_14.3.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM62_5.0.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM65.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM70.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM75.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM80.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM85.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUM90.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/BLOSUMN.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/CorBLOSUM49_5.0.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/CorBLOSUM57_13p.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/CorBLOSUM57_14.3.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/CorBLOSUM61_5.0.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/CorBLOSUM66_13p.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/CorBLOSUM67_14.3.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/DAYHOFF.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/GONNET.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/IDENTITY.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/MATCH.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/NUC.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM10.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM100.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM110.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM120.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM130.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM140.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM150.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM160.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM170.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM180.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM190.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM20.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM200.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM210.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM220.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM230.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM240.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM250.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM260.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM270.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM280.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM290.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM30.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM300.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM310.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM320.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM330.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM340.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM350.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM360.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM370.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM380.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM390.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM40.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM400.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM410.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM420.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM430.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM440.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM450.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM460.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM470.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM480.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM490.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM50.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM500.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM60.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM70.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM80.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PAM90.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PB.license'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/PB.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/RBLOSUM52_5.0.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/RBLOSUM59_13p.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/RBLOSUM59_14.3.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/RBLOSUM64_5.0.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/RBLOSUM69_13p.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/align/matrix_data/RBLOSUM69_14.3.mat'
python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/alignment.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/colorschemes.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/dendrogram.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/features.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/logo.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/plasmid.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/3di_flower.json'
python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/autumn.json'
python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/blossom.json'
python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/clustalx_dna.json'
python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/clustalx_protein.json'
python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/flower.json'
python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/jalview_buried.json'
python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/jalview_hydrophobicity.json'
python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/jalview_prop_helix.json'
python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/jalview_prop_strand.json'
python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/jalview_prop_turn.json'
python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/jalview_taylor.json'
python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/jalview_zappo.json'
python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/ocean.json'
python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/pb_flower.json'
python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/rainbow_dna.json'
python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/rainbow_protein.json'
python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/spring.json'
python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/sunset.json'
python3.14-biotite-1.7.1> adding 'biotite/sequence/graphics/color_schemes/wither.json'
python3.14-biotite-1.7.1> adding 'biotite/sequence/io/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/io/general.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/io/clustal/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/io/clustal/convert.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/io/clustal/file.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/io/fasta/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/io/fasta/convert.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/io/fasta/file.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/io/fastq/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/io/fastq/convert.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/io/fastq/file.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/io/genbank/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/io/genbank/annotation.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/io/genbank/file.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/io/genbank/metadata.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/io/genbank/sequence.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/io/gff/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/io/gff/convert.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/io/gff/file.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/phylo/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/sequence/phylo/nj.c'
python3.14-biotite-1.7.1> adding 'biotite/sequence/phylo/nj.cpython-314-x86_64-linux-gnu.so'
python3.14-biotite-1.7.1> adding 'biotite/sequence/phylo/nj.pyi'
python3.14-biotite-1.7.1> adding 'biotite/sequence/phylo/nj.pyx'
python3.14-biotite-1.7.1> adding 'biotite/sequence/phylo/tree.c'
python3.14-biotite-1.7.1> adding 'biotite/sequence/phylo/tree.cpython-314-x86_64-linux-gnu.so'
python3.14-biotite-1.7.1> adding 'biotite/sequence/phylo/tree.pyi'
python3.14-biotite-1.7.1> adding 'biotite/sequence/phylo/tree.pyx'
python3.14-biotite-1.7.1> adding 'biotite/sequence/phylo/upgma.c'
python3.14-biotite-1.7.1> adding 'biotite/sequence/phylo/upgma.cpython-314-x86_64-linux-gnu.so'
python3.14-biotite-1.7.1> adding 'biotite/sequence/phylo/upgma.pyi'
python3.14-biotite-1.7.1> adding 'biotite/sequence/phylo/upgma.pyx'
python3.14-biotite-1.7.1> adding 'biotite/structure/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/atoms.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/atoms.pyi'
python3.14-biotite-1.7.1> adding 'biotite/structure/basepairs.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/bonds.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/bonds.pyi'
python3.14-biotite-1.7.1> adding 'biotite/structure/box.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/celllist.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/celllist.pyi'
python3.14-biotite-1.7.1> adding 'biotite/structure/chains.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/charges.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/compare.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/connect.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/density.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/dotbracket.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/error.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/filter.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/geometry.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/hbond.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/integrity.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/mechanics.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/molecules.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/pseudoknots.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/rdf.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/repair.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/residues.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/rings.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/sasa.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/segments.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/sequence.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/spacegroups.json'
python3.14-biotite-1.7.1> adding 'biotite/structure/spacegroups.license'
python3.14-biotite-1.7.1> adding 'biotite/structure/sse.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/superimpose.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/tm.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/transform.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/util.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/alphabet/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/alphabet/encoder.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/alphabet/encoder_weights_3di.kerasify'
python3.14-biotite-1.7.1> adding 'biotite/structure/alphabet/i3d.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/alphabet/layers.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/alphabet/pb.license'
python3.14-biotite-1.7.1> adding 'biotite/structure/alphabet/pb.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/alphabet/unkerasify.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/graphics/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/graphics/atoms.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/graphics/rna.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/info/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/info/atom_masses.json'
python3.14-biotite-1.7.1> adding 'biotite/structure/info/atoms.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/info/bonds.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/info/ccd.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/info/groups.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/info/masses.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/info/misc.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/info/radii.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/info/standardize.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/io/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/io/general.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/io/trajfile.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/io/util.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/io/dcd/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/io/dcd/file.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/io/gro/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/io/gro/file.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/io/mol/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/io/mol/convert.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/io/mol/ctab.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/io/mol/header.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/io/mol/mol.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/io/mol/sdf.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/io/netcdf/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/io/netcdf/file.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/io/pdb/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/io/pdb/convert.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/io/pdb/file.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/io/pdbqt/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/io/pdbqt/convert.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/io/pdbqt/file.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/io/pdbx/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/io/pdbx/bcif.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/io/pdbx/cif.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/io/pdbx/component.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/io/pdbx/compress.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/io/pdbx/convert.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/io/pdbx/encoding.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/io/trr/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/io/trr/file.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/io/xtc/__init__.py'
python3.14-biotite-1.7.1> adding 'biotite/structure/io/xtc/file.py'
python3.14-biotite-1.7.1> adding 'biotite-1.7.1.dist-info/licenses/LICENSE.rst'
python3.14-biotite-1.7.1> adding 'rust/lib.rs'
python3.14-biotite-1.7.1> adding 'rust/util.rs'
python3.14-biotite-1.7.1> adding 'rust/sequence/codec.rs'
python3.14-biotite-1.7.1> adding 'rust/sequence/mod.rs'
python3.14-biotite-1.7.1> adding 'rust/structure/bonds.rs'
python3.14-biotite-1.7.1> adding 'rust/structure/celllist.rs'
python3.14-biotite-1.7.1> adding 'rust/structure/charges.rs'
python3.14-biotite-1.7.1> adding 'rust/structure/connect.rs'
python3.14-biotite-1.7.1> adding 'rust/structure/mod.rs'
python3.14-biotite-1.7.1> adding 'rust/structure/sasa.rs'
python3.14-biotite-1.7.1> adding 'rust/structure/util.rs'
python3.14-biotite-1.7.1> adding 'rust/structure/io/mod.rs'
python3.14-biotite-1.7.1> adding 'rust/structure/io/pdb/file.rs'
python3.14-biotite-1.7.1> adding 'rust/structure/io/pdb/hybrid36.rs'
python3.14-biotite-1.7.1> adding 'rust/structure/io/pdb/mod.rs'
python3.14-biotite-1.7.1> adding 'rust/structure/io/pdbx/encoding.rs'
python3.14-biotite-1.7.1> adding 'rust/structure/io/pdbx/mod.rs'
python3.14-biotite-1.7.1> adding 'biotite-1.7.1.dist-info/METADATA'
python3.14-biotite-1.7.1> adding 'biotite-1.7.1.dist-info/WHEEL'
python3.14-biotite-1.7.1> adding 'biotite-1.7.1.dist-info/top_level.txt'
python3.14-biotite-1.7.1> adding 'biotite-1.7.1.dist-info/RECORD'
python3.14-biotite-1.7.1> removing build/bdist.linux-x86_64/wheel
python3.14-biotite-1.7.1> Successfully built biotite-1.7.1-cp314-cp314-linux_x86_64.whl
python3.14-biotite-1.7.1> Finished creating a wheel...
python3.14-biotite-1.7.1> Finished executing pypaBuildPhase
python3.14-biotite-1.7.1> buildPhase completed in 3 minutes 3 seconds
python3.14-biotite-1.7.1> Running phase: pythonRuntimeDepsCheckHook
python3.14-biotite-1.7.1> Executing pythonRuntimeDepsCheck
python3.14-biotite-1.7.1> Checking runtime dependencies for biotite-1.7.1-cp314-cp314-linux_x86_64.whl
python3.14-biotite-1.7.1> Finished executing pythonRuntimeDepsCheck
python3.14-biotite-1.7.1> Running phase: installPhase
python3.14-biotite-1.7.1> Executing pypaInstallPhase
python3.14-biotite-1.7.1> Successfully installed biotite-1.7.1-cp314-cp314-linux_x86_64.whl
python3.14-biotite-1.7.1> Finished executing pypaInstallPhase
python3.14-biotite-1.7.1> Running phase: pythonOutputDistPhase
python3.14-biotite-1.7.1> Executing pythonOutputDistPhase
python3.14-biotite-1.7.1> Finished executing pythonOutputDistPhase
python3.14-biotite-1.7.1> Running phase: fixupPhase
python3.14-biotite-1.7.1> shrinking RPATHs of ELF executables and libraries in /nix/store/vq7ny1xlw6781i485rvdyjxdgj7lfhil-python3.14-biotite-1.7.1
python3.14-biotite-1.7.1> shrinking /nix/store/vq7ny1xlw6781i485rvdyjxdgj7lfhil-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/rust.cpython-314-x86_64-linux-gnu.so
python3.14-biotite-1.7.1> shrinking /nix/store/vq7ny1xlw6781i485rvdyjxdgj7lfhil-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/banded.cpython-314-x86_64-linux-gnu.so
python3.14-biotite-1.7.1> shrinking /nix/store/vq7ny1xlw6781i485rvdyjxdgj7lfhil-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/kmeralphabet.cpython-314-x86_64-linux-gnu.so
python3.14-biotite-1.7.1> shrinking /nix/store/vq7ny1xlw6781i485rvdyjxdgj7lfhil-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/kmersimilarity.cpython-314-x86_64-linux-gnu.so
python3.14-biotite-1.7.1> shrinking /nix/store/vq7ny1xlw6781i485rvdyjxdgj7lfhil-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/kmertable.cpython-314-x86_64-linux-gnu.so
python3.14-biotite-1.7.1> shrinking /nix/store/vq7ny1xlw6781i485rvdyjxdgj7lfhil-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/localgapped.cpython-314-x86_64-linux-gnu.so
python3.14-biotite-1.7.1> shrinking /nix/store/vq7ny1xlw6781i485rvdyjxdgj7lfhil-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/localungapped.cpython-314-x86_64-linux-gnu.so
python3.14-biotite-1.7.1> shrinking /nix/store/vq7ny1xlw6781i485rvdyjxdgj7lfhil-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/multiple.cpython-314-x86_64-linux-gnu.so
python3.14-biotite-1.7.1> shrinking /nix/store/vq7ny1xlw6781i485rvdyjxdgj7lfhil-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/pairwise.cpython-314-x86_64-linux-gnu.so
python3.14-biotite-1.7.1> shrinking /nix/store/vq7ny1xlw6781i485rvdyjxdgj7lfhil-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/permutation.cpython-314-x86_64-linux-gnu.so
python3.14-biotite-1.7.1> shrinking /nix/store/vq7ny1xlw6781i485rvdyjxdgj7lfhil-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/selector.cpython-314-x86_64-linux-gnu.so
python3.14-biotite-1.7.1> shrinking /nix/store/vq7ny1xlw6781i485rvdyjxdgj7lfhil-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/align/tracetable.cpython-314-x86_64-linux-gnu.so
python3.14-biotite-1.7.1> shrinking /nix/store/vq7ny1xlw6781i485rvdyjxdgj7lfhil-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/phylo/nj.cpython-314-x86_64-linux-gnu.so
python3.14-biotite-1.7.1> shrinking /nix/store/vq7ny1xlw6781i485rvdyjxdgj7lfhil-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/phylo/tree.cpython-314-x86_64-linux-gnu.so
python3.14-biotite-1.7.1> shrinking /nix/store/vq7ny1xlw6781i485rvdyjxdgj7lfhil-python3.14-biotite-1.7.1/lib/python3.14/site-packages/biotite/sequence/phylo/upgma.cpython-314-x86_64-linux-gnu.so
python3.14-biotite-1.7.1> checking for references to /build/ in /nix/store/vq7ny1xlw6781i485rvdyjxdgj7lfhil-python3.14-biotite-1.7.1...
python3.14-biotite-1.7.1> patching script interpreter paths in /nix/store/vq7ny1xlw6781i485rvdyjxdgj7lfhil-python3.14-biotite-1.7.1
python3.14-biotite-1.7.1> stripping (with command strip and flags -S -p) in  /nix/store/vq7ny1xlw6781i485rvdyjxdgj7lfhil-python3.14-biotite-1.7.1/lib
python3.14-biotite-1.7.1> shrinking RPATHs of ELF executables and libraries in /nix/store/y1j3qm1gwwdin717fjzr2w9imjh1wzfi-python3.14-biotite-1.7.1-dist
python3.14-biotite-1.7.1> checking for references to /build/ in /nix/store/y1j3qm1gwwdin717fjzr2w9imjh1wzfi-python3.14-biotite-1.7.1-dist...
python3.14-biotite-1.7.1> patching script interpreter paths in /nix/store/y1j3qm1gwwdin717fjzr2w9imjh1wzfi-python3.14-biotite-1.7.1-dist
python3.14-biotite-1.7.1> Executing pythonRemoveTestsDir
python3.14-biotite-1.7.1> Finished executing pythonRemoveTestsDir
python3.14-biotite-1.7.1> Running phase: pythonCatchConflictsPhase
python3.14-biotite-1.7.1> Running phase: pythonRemoveBinBytecodePhase
python3.14-biotite-1.7.1> Running phase: pythonImportsCheckPhase
python3.14-biotite-1.7.1> Executing pythonImportsCheckPhase
python3.14-biotite-1.7.1> Check whether the following modules can be imported: biotite biotite.sequence biotite.structure
python3.14-biotite-1.7.1> Running phase: pythonMetadataCheckPhase
python3.14-biotite-1.7.1> Executing pythonMetadataCheckPhase

post-build step Route build to niks3: ok
Pushing SBEE-Lab/bioinformatics-toolkits to https://niks3.sjanglab.org
time=2026-08-20T03:48:19.864+09:00 level=INFO msg="Uploading 0 paths to niks3.sjanglab.org (49 already cached)"
time=2026-08-20T03:48:20.322+09:00 level=INFO msg="Upload complete. (569ms)"